Dhop018531.1
Basic Information
- Insect
- Dorcus hopei
- Gene Symbol
- stc
- Assembly
- GCA_033060865.1
- Location
- CM065422.1:15008475-15018174[+]
Transcription Factor Domain
- TF Family
- zf-NF-X1
- Domain
- zf-NF-X1 domain
- PFAM
- PF01422
- TF Group
- Zinc-Coordinating Group
- Description
- This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 2 5.2e+04 -4.1 1.6 15 19 353 357 352 357 0.81 2 14 0.08 2.1e+03 0.4 0.5 4 10 386 392 385 396 0.96 3 14 1.7e-06 0.046 15.3 15.7 3 19 400 416 392 416 0.85 4 14 2e-06 0.054 15.0 12.5 1 19 452 470 452 470 0.97 5 14 9.7e-09 0.00026 22.5 16.4 1 19 510 528 510 528 0.98 6 14 5.6e-06 0.15 13.6 15.2 4 19 575 590 568 590 0.87 7 14 1.1 2.9e+04 -3.3 2.2 5 10 619 624 619 624 0.93 8 14 0.1 2.8e+03 -0.0 5.9 3 11 632 640 630 642 0.88 9 14 1.3 3.5e+04 -3.5 1.1 4 10 645 651 644 651 0.73 10 14 1.8e-08 0.00047 21.6 8.0 1 19 657 675 657 675 0.98 11 14 2 5.3e+04 -4.2 1.3 6 10 704 708 703 708 0.76 12 14 0.0038 1e+02 4.6 11.3 1 19 714 731 714 731 0.84 13 14 3.4e-08 0.00089 20.7 18.7 1 19 767 786 767 789 0.96 14 14 0.001 26 6.4 17.0 3 19 797 815 796 815 0.93
Sequence Information
- Coding Sequence
- ATGTCTTACTGGAATCCGAACTTCATCCCGACACCCAACTATCAAATTGGTGACGATTCGTTGTACACCGATCCTGGACTATACACTATGTTTAATCCATACACCGAGAACGGTGGCAATTATTACACTCCTCATTTTACGCACAATTATAACCAAAACATGCCCATGAACTTTTACAATGCTATGCCGGGCATGGAATCTCAGCGTTTTAGCAATGACGGCGGGCAGGGAAATCAAGCGAACGCTTATGGCGTTGGAACTAGCgatggttttaatttaagagtCAATCCTGCACAGGTTAGAGAATCTAAGCTTACGCCCACCGCAGAAGAATTCAAACCTCGAAATATGACTTATTATAGTTCAGAAAACGGAACGAATAGCGGCACTGTGAAGAAACCACACAATTATAACAAGAACAAAAAGCAAAATGGAAACGAACACTGGTCCGCTGGCGGTTCATCGAAACAGAATGATAAATACGAGAATCAAACCTACTACAAACAGAAACGAAAAGGCTATGGTAATAAAAGTAACGAGCAAAGTAGAACCTTGGAAGAAACATCGTCTGCATCTTCCGTGTATGCAGTTGAGGAAAAACCAAGGGAAGAAGGGGAAGCACAGGTTAATAATGAAAGATTTTACGATCCACATAAAGCGAGAGGCTTCGATAAGCACGGCAAGAATTGGAATAACGGTAAAAATGGCGATTACTCTTATAAGAAAAATGGCAAAaataaatatgataaaaaatatgAGGAGCCACTTGAGAAACGCGAAATAGAAAATTGGAGGCAAAACATGAATGTTCATACAAGTAACTGGGAGGACAAGAAAGACGCAAACCCGCAGGAacttaaaaagaaattcgATGCCGCATCTCAAAGGGAACGCCTGGTGCAAATGGTAGAGCGTCGCCACTTAGAATGCCTTGTTTGCTGCGAGCGTTTACGCCACAGCGATTCGATTTGGTCGTGCAAACAATGCTACCACATCATCCATTTAAACTGCGTTATTCGTTGGGCGAAAACATCGAAACTTGAAACTGGTTGGAGATGTCCGGCTTGCCAGAACGTTTACTCTAACGTCCCCAACGAGTACCGTTGTTACTGTGATAAAATGTTACAACCGCGCCTGGAACCCGGAACGCTTCCACACAGCTGCGGAGAAGTATGCGGTAGGAAAGGACGTTCCTGCGAACACACTTGCACGTTACTGTGTCATCCTGGACCTTGTCCTGAATGCACTATTTTCATACCGAGGTCATGCGGTTGCGGCTCTACGAAACCAACTGTGAAATGCAGCTCAGATGTTCCTATTGTCTGTCAGAATATATGCAGGAAGGTTTTAGAATGTGGCTTGCATAATTGCACTAGTAATTGTCACGTAGGTAAATGCGGTGATTGCAAAGAAGTTTTGAAGCAAGAGTGCTATTGCGGGAAGGTCGGTCGAAAAGTGCCTTGCACTTCTGAAACTAAAGGAAGTTTACAGTATGATTGTGGAGAAGTGTGCGGGAAGGTTTTGCCTTGTGGTAATCATCATTGTGAAGCACTGTGTCATCCGGGGGAATGTTCACCGTGCCGCACGTCTCCATCGGTGATTACAACTTGTCCGTGTGGGCAAATGAAGCTGACTACTCAGAGAAAATCATGCATGGATTCAATCCCTTGCTGTGATAAGGTTTGCAATAAGATTTTAAAGTGTGGCCAACCTAGTGCTCCCCATCAATGTCAAAGGAAATGTCACAAAGGCAAGTGTCCACGATGTCCTCTAAATACTTTCGTGCGCTGTCGCTGTGGTCACATGGATAAAGAGATTGCATGTCGCGAGCTTAAAACCAAAGCGGATGATGCACGTTGCCAAAAGAAGTGCACCAAGCTGCGGCTTTGTTATAAACACAAGTGCAACCAGATGTGCTGTATTGAAGTGGAACATGTGTGTCCTCTTCCGTGCAATCGCATGTTATCTTGTGGCCTACATCGTTGTGAAGAGACGTGCCATCGAGCGCTGTGCCCATCTTGTTGGCGCACCAGTTTTCAAGAGTTGTACTGCGAATGCGGTGCTAGCGTCCTGTATCCACCCGTTGCTTGTGGAACACGTCCTCCACCTTGCAATAAACCGTGCTCTCGACAGAGAGTTTGTGGACACGATGCAAATCATAACTGTCACACTGGTATGTGCCCACCATGCACGGTTATGACGAAGAGATGGTGTCACGGTCACCACGAGCAAAGATCTACTATACTTTGTTACCAAGAAGACTTTAGTTGTGGATTGCCTTGCGGTAAAGAAATGTCCTGTGGTAAACACAAGTGTATCCAACCGTGTCACACTGGGCCTTGTCCTTTTCCGTGTACTCAACCTTGCACTACAGTTCGCCAAACGTGTGAGCACACTTGCAATCAACCATGTCACGAGCCGCCTTGTCCGGAAACCCCATGCAAGCAAACAGTCCGCGTAACCTGCCAGTGCGGGCAAAGATCAAGCACCAGGTCATGCGTTGAGTTAACCAGCGAATATCAGAGCATCGCAATGTCTCACCTGGCTTCGAAAATGGCTGACATTCAAAAGGGACAAGTTGTCGACATTAGCGATATTGTAAGTGGACAGAAAAAGCATGGAACACTTAAAACATTGGAGTGTAATGAAGATTGTAGACTTCTTGAACGTAACCGCCGCATGGCAATCGCATTACAAATACGTAATCCAGACTTGAGTGCGAAATTAACTCCACGCTACTCTGATTTCATGAAATTTTGGGCTAAAAAAGATTCGCGCTTCTGCCAACATGTGCATGATAAACTCACCGAGCTTGTGCAACTCGCCAAGCAGAGCAAGCAAAAAAGTCGTTCCTATTCGTTTGATAGTATGAATAAAGATAAGCGTCACTTCGTGCATGAATATTGTGAGCACTTTGGGTGTGAGAGCGAAGCTTATGATGCTGAGCCCAACCGCAATGTTGTTGCCACCGCTTTTCGAGACAAGTCCTGGCTGCCGAGCATCAGTCTTCTTGAATTCCTGCAACGAGAAAATGGGCAACGCAAGGTTCCCGGCCCGATCGTTGGAAAGAAGAAGTTGCTCAGCCGCACGGCCAAGCCTCCCACTCCACCCGGAGAATATGTTGATTATTTTGATGATCCACCAGTATGA
- Protein Sequence
- MSYWNPNFIPTPNYQIGDDSLYTDPGLYTMFNPYTENGGNYYTPHFTHNYNQNMPMNFYNAMPGMESQRFSNDGGQGNQANAYGVGTSDGFNLRVNPAQVRESKLTPTAEEFKPRNMTYYSSENGTNSGTVKKPHNYNKNKKQNGNEHWSAGGSSKQNDKYENQTYYKQKRKGYGNKSNEQSRTLEETSSASSVYAVEEKPREEGEAQVNNERFYDPHKARGFDKHGKNWNNGKNGDYSYKKNGKNKYDKKYEEPLEKREIENWRQNMNVHTSNWEDKKDANPQELKKKFDAASQRERLVQMVERRHLECLVCCERLRHSDSIWSCKQCYHIIHLNCVIRWAKTSKLETGWRCPACQNVYSNVPNEYRCYCDKMLQPRLEPGTLPHSCGEVCGRKGRSCEHTCTLLCHPGPCPECTIFIPRSCGCGSTKPTVKCSSDVPIVCQNICRKVLECGLHNCTSNCHVGKCGDCKEVLKQECYCGKVGRKVPCTSETKGSLQYDCGEVCGKVLPCGNHHCEALCHPGECSPCRTSPSVITTCPCGQMKLTTQRKSCMDSIPCCDKVCNKILKCGQPSAPHQCQRKCHKGKCPRCPLNTFVRCRCGHMDKEIACRELKTKADDARCQKKCTKLRLCYKHKCNQMCCIEVEHVCPLPCNRMLSCGLHRCEETCHRALCPSCWRTSFQELYCECGASVLYPPVACGTRPPPCNKPCSRQRVCGHDANHNCHTGMCPPCTVMTKRWCHGHHEQRSTILCYQEDFSCGLPCGKEMSCGKHKCIQPCHTGPCPFPCTQPCTTVRQTCEHTCNQPCHEPPCPETPCKQTVRVTCQCGQRSSTRSCVELTSEYQSIAMSHLASKMADIQKGQVVDISDIVSGQKKHGTLKTLECNEDCRLLERNRRMAIALQIRNPDLSAKLTPRYSDFMKFWAKKDSRFCQHVHDKLTELVQLAKQSKQKSRSYSFDSMNKDKRHFVHEYCEHFGCESEAYDAEPNRNVVATAFRDKSWLPSISLLEFLQRENGQRKVPGPIVGKKKLLSRTAKPPTPPGEYVDYFDDPPV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01258904;
- 90% Identity
- iTF_00467153;
- 80% Identity
- -