Dhop036570.1
Basic Information
- Insect
- Dorcus hopei
- Gene Symbol
- -
- Assembly
- GCA_033060865.1
- Location
- CM065425.1:74413565-74414845[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.58 8e+02 1.8 0.0 21 44 37 60 29 68 0.86 2 13 0.0044 6.1 8.5 0.1 21 44 65 88 60 98 0.86 3 13 1 1.4e+03 0.9 0.0 21 49 93 121 89 126 0.80 4 13 1.4 1.9e+03 0.5 0.1 22 44 122 144 117 152 0.87 5 13 1 1.4e+03 1.0 0.1 21 43 149 171 147 176 0.88 6 13 0.019 27 6.5 0.1 21 44 177 200 174 204 0.90 7 13 0.00077 1.1 11.0 0.3 21 44 205 228 202 237 0.86 8 13 6.5 9e+03 -1.6 0.0 21 43 233 255 230 260 0.73 9 13 0.14 2e+02 3.7 0.0 21 44 261 284 256 289 0.89 10 13 0.015 21 6.9 0.1 21 44 289 312 285 321 0.88 11 13 2.1 3e+03 -0.0 0.1 22 44 318 340 314 344 0.83 12 13 0.0045 6.3 8.5 0.2 21 44 345 368 341 372 0.90 13 13 0.33 4.6e+02 2.6 0.2 21 48 373 399 369 402 0.90
Sequence Information
- Coding Sequence
- ATGATAATCGAAACTAACGTTCTGGGCCAAAGCATATTCGAATGTCGGCTGTGCGGTTCTAAATTTAAAACTCGCGCATACATGCGCAAGCACATCCAgatacataccggcgagaaaccgttcggcTGTGATTTTTGCGAATACAGGTGCCGAAATGCCGGAAATCTTAAACTGCACTCGTTcatacataccggcgagaagccgttctgCTGCGAACATTGCGATTACAAGACTCGACAAGTCGGGAACCTGAAGCGGCACATATTAACGCACACCGATGAGAAGCCGTTCATTTGCGACCAGTGCGCTTATAAAGGCCGAAATTTCTGGAAGCTGAAACGTCACATGTTGACGCACACCGTAGAGAAACCGTATTTCTGCGGCCTTTGCGACTACAAGTGCCGCGAAGCCGTGAGTTTGAAAGagcacatgttaatacacaccggcgagaggcCGTTTAGTTGTAAACTTTGCGGCCACAAATGCCGAAACGCCGGAAAACTAAAGCAACACACCCTAACACACGCCGATGAAAAGCCCtacagttgtgatctctgcggtTACAGGTGCCACCAATCCGGAAACTTGAAAAGtcacatgttaacgcacacaGACGAGAAGCCATTTTGTTGTGAACTCTGCGATTACAAAACTCGACAGGCCACAAACTTGAAACGGCACAGATTAAtccacaccggcgagaagccgtttagttgtgaccTGTGTGATTATAAAGGCCGAGAACTCATCAAGTTGAAGAGCcacatgttaacgcacaccgacgagaaaccatTCTTCTGTGGcatttgcgattacaagtgccgaGAAGCCGCAAGTTTGAAACAACACATGTTAACACATACGGGTGAGacgccattcagttgtgatctttgcgattacaaatgccaaaGCTCGAGAAAGTTGAGACAGCATGTGGTAACACACGgtgacgagaaaccgttcagttgcgatctttgcgactaCAGGTGTCAACAAGCCGAAAGTTTCAAAAGtcacatgttaacgcacaccGATGAGAAGCCTTTCCGTTGTGAACACTGCGATTACAAAAGCCGTCAGGTCGCAAATTTAAAACGACACTTGTTAGTACACACCGGCGAAAGGCCGTTTAGCTGtaatctctgcgattataaatgccgagaaGCGGGAAGATTGAAAATGCACATGTTAAGACACACCGGTTTCAAGTGGAATGTGTCGAAACGCACCGGCGAGAGCTCAACAGTCGTGCAAAATCAACTAGAAGATCCCATAGGCTGA
- Protein Sequence
- MIIETNVLGQSIFECRLCGSKFKTRAYMRKHIQIHTGEKPFGCDFCEYRCRNAGNLKLHSFIHTGEKPFCCEHCDYKTRQVGNLKRHILTHTDEKPFICDQCAYKGRNFWKLKRHMLTHTVEKPYFCGLCDYKCREAVSLKEHMLIHTGERPFSCKLCGHKCRNAGKLKQHTLTHADEKPYSCDLCGYRCHQSGNLKSHMLTHTDEKPFCCELCDYKTRQATNLKRHRLIHTGEKPFSCDLCDYKGRELIKLKSHMLTHTDEKPFFCGICDYKCREAASLKQHMLTHTGETPFSCDLCDYKCQSSRKLRQHVVTHGDEKPFSCDLCDYRCQQAESFKSHMLTHTDEKPFRCEHCDYKSRQVANLKRHLLVHTGERPFSCNLCDYKCREAGRLKMHMLRHTGFKWNVSKRTGESSTVVQNQLEDPIG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00465279;
- 90% Identity
- iTF_00465279;
- 80% Identity
- iTF_00465279;