Dhop036435.1
Basic Information
- Insect
- Dorcus hopei
- Gene Symbol
- -
- Assembly
- GCA_033060865.1
- Location
- CM065425.1:72699927-72701282[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 1.8 2.6e+03 0.2 0.2 26 43 41 58 35 63 0.83 2 12 0.011 15 7.3 0.2 21 44 64 87 61 92 0.91 3 12 0.00043 0.6 11.8 0.1 21 45 92 116 89 125 0.86 4 12 1.7 2.4e+03 0.3 0.0 22 52 121 151 116 153 0.85 5 12 0.78 1.1e+03 1.4 0.3 21 44 148 171 132 176 0.86 6 12 0.065 90 4.8 0.2 21 44 176 199 172 207 0.87 7 12 0.001 1.4 10.6 0.1 21 47 204 230 201 236 0.86 8 12 1.4 1.9e+03 0.6 0.1 23 52 234 262 231 264 0.84 9 12 0.31 4.3e+02 2.6 0.1 13 44 279 310 269 315 0.83 10 12 0.038 53 5.5 0.0 21 43 315 337 312 346 0.89 11 12 0.18 2.5e+02 3.4 0.1 22 44 360 382 356 385 0.87 12 12 0.00023 0.31 12.7 0.2 20 48 386 413 384 419 0.88
Sequence Information
- Coding Sequence
- ATGATGAGGTCGAGTTTTATTGCATCTCGTTCTCTTGTAATAATCCACCACTGTGAGTTACTCGTTTGTTTCAGATATACCGATGCGCATGTGTTAACACACACCAGAGAAAAGCTGTTCGCCTGTGACagttgcgattacaaatgccgcgACTCCAGCAGattgaagcggcacaagttaatACACACCAGCGAGAAGTCGTTCACTTGCAATCTCTGCGACTACAGATGCCGACTGAGCACAACCTTAAAACGTCACATGTTGACACACACCGGAGAAAAACCGTTCGGTTGTGACGTTTGCGGTTGCAAATTCCGACAGTCCAGCCATTTAAGGCAGCACATGTTCACGCACACCGGCAAGAAGCCGTACGGCTGTGACCTCTGCGATCAGAAGTATCGATCTCCCGGGGAACTGAAAcaacacatgttaatacacaccaGCAccaagccgttcagttgtgaacTTTGCGATTACAGTTGCCGAGAACGCAGACTGTTGAATTATCATATGTTGGCGCACACCGGTGAGAacccgttcagttgtgacctttgccaTTATAAATGTCGGCTGCATTCAtctttgaaacggcacatgttaacgcacaccGATGAGAAACCCTTCAGTTGTGATCTGTGCGATGCCAAATTCAAACAAGCCTGCCGGTTGAAGCgacacatgttaatacacaccggctTGAAACCTTTTAGCTGTGACCTGTGCGATTTCAGCTGCAGAGAACGGCGGGTTTTAAACTATCACAAGTTGGTACACACCGAGAAGCCGTTCGCTTGCGATTTTTGCGTTTACAAGGGGCGATCTCGTGGTGAGTTGGAAAAACACCATGCGGTACACGCCGATGAGAAGCCGTTTAggtgtgatctttgcgattacatcTGCCGAGATCAGGAGCGTTTGAGTGAGCATGTGTTaacacacaccggcgagaagcctctcagttgtgacctttgcgatttcGTATGTCGTGAATCCTTTgatatgaaagagcacagctcAACTCACACCGTTAGGAAAGCTAACGGTTGTAGTCGCACAGTTTTGTTGACGGACACCGACGAGAGGTCGTTCGCTTGTGATCTTTGCCATTGCAAGTTCAGACAGGCGGGTCAGTTGAAGTACCACATGTTAACGCATACcagcgagaaaccgttcagttgcaATATgtgcgattacaagtgccgaTCTAGCCGAGATTTGAAAAAACACGTGTCGAGACACGCCGACAAAGCGCAGAAGACATTGAGTTGCAGACTTTGCGATTACAACTGCGATCAAAATAAGCATTTGGAAGAACACATGCTTAACACGCATAACGTAAATGTCGAAAACCCCTAA
- Protein Sequence
- MMRSSFIASRSLVIIHHCELLVCFRYTDAHVLTHTREKLFACDSCDYKCRDSSRLKRHKLIHTSEKSFTCNLCDYRCRLSTTLKRHMLTHTGEKPFGCDVCGCKFRQSSHLRQHMFTHTGKKPYGCDLCDQKYRSPGELKQHMLIHTSTKPFSCELCDYSCRERRLLNYHMLAHTGENPFSCDLCHYKCRLHSSLKRHMLTHTDEKPFSCDLCDAKFKQACRLKRHMLIHTGLKPFSCDLCDFSCRERRVLNYHKLVHTEKPFACDFCVYKGRSRGELEKHHAVHADEKPFRCDLCDYICRDQERLSEHVLTHTGEKPLSCDLCDFVCRESFDMKEHSSTHTVRKANGCSRTVLLTDTDERSFACDLCHCKFRQAGQLKYHMLTHTSEKPFSCNMCDYKCRSSRDLKKHVSRHADKAQKTLSCRLCDYNCDQNKHLEEHMLNTHNVNVENP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00465307;
- 90% Identity
- iTF_00465307;
- 80% Identity
- iTF_00465307;