Dhop036467.1
Basic Information
- Insect
- Dorcus hopei
- Gene Symbol
- -
- Assembly
- GCA_033060865.1
- Location
- CM065425.1:73292299-73297799[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 8 0.044 62 5.3 0.0 21 44 200 223 190 230 0.88 2 8 3.7 5.1e+03 -0.8 0.0 22 49 250 276 244 279 0.77 3 8 1.8 2.5e+03 0.2 0.1 22 45 306 329 302 337 0.82 4 8 0.21 2.9e+02 3.2 0.0 23 43 335 355 331 360 0.89 5 8 0.072 99 4.7 0.0 21 45 361 385 358 393 0.89 6 8 0.012 17 7.2 0.1 21 52 395 426 389 428 0.89 7 8 0.00045 0.63 11.7 0.1 23 44 425 446 420 451 0.89 8 8 0.0032 4.4 9.0 0.2 21 48 451 478 448 479 0.94
Sequence Information
- Coding Sequence
- ATGACCGATGAACAGCAACAAGGTGCTGAAAAAATGCACAAGGAAAGCGCATTAATAGTCGACAGTGACTTAACCATTTCATCACCACCCAAGAAAAGAATCTGTGCAAAATTATTTGACAGCTTCAATGATGATACAAAAAAGATAATTCGCCGTACTGTGCACAACTTCTTCCAGAGAAATGAAATGCCAACTTTGGATAAAATTCTTCAAGCATTAACTGAAAACGAAACTGTACCACCGCTGTCTAGGTCGACCATACGGAATATTCTGAAACAGTTAGGATTCTGCGTTGAAAAACAAGGTAGGAATCACATGCTACTTAAAAAGCCTGAAATAGTTTTATGGCGCTGCGCATATATAAATAAATCTGTGAGTATCGTCAGGAGTTTCGTAACATTTAATATATGGATAAGACATGGGTTAACACAGGACACACTATGCCAAAAATTTGGAAGGATAAGACTGTCACAAGGCAGACATTATATAAACGACCAAGATCCTTTACGCACCGGAGCAAAGTTGATCACCTGCGATAGttgtgattataaatgtcgCGATACCTTCAAgatgaaacggcacaagttcatacacaccggcgagaaaccgtatAGTTGCGGCCTTTGCCTTTATATTACCGGAACGAGTAGCACTTTGAAAAAGCACTTGTTAACACACACCGAGAAAGAAACGTCGAGTTGCGATCGGAAGCGTCGACTTAGCGCAGATTTGTCGAATAAAGCCGACGAGAAGTTGTTCACTtgcggtctttgcgattacgaAGGGCGAGATCGCAACCAGTTGAATCAGCATATATTAATACACTTTGACAGGAAATCTCTGAGTTGTGATGCTTGCGATTTCAAATGTCGAGATGAGATCGCTTTAAAAAATCACAAGTTAGCTCACACCGTCGAGGCACCGTTGAGTTGCggcctttgcgattataaatgccgactgCGCACCGTTTTGAAACAGCACTTGCTGACACACACCGACGTTAAGCCGTTCAGTTGCAACCTTTGCGATTCCAAATTCAGGCAGAAAGGTCATCTGAGAGTCCACAAGTTAATACATACTGGCGAGAAGCCACACAGTTGCAGCTTATGCGATCACAAGTCTCGATCTGGCGGAGACTTGAAGAAACACATGGAAAGCCACCTTGACAAAAAATACCGAAACACTGAAAAAACGGCCAGTTGCGGCCTTTGCGATTTGAAGTTCAAAAGATTGACGCATTTAAGACGGCACATGTTGACTCATACCAACGCAAAGCCGTACAGTTGCGAGATTTGCCATTCCGCGTTCAGACAGTCGGGTCACTTGAAGCAGCATATGttgatacacaccggcgagaaaccgttcagttgtgattcttgcgattacaagtgccgaTCTAACGGAGACTTGAGGAGGCACGTCAAAGCACGCCATTCTTAG
- Protein Sequence
- MTDEQQQGAEKMHKESALIVDSDLTISSPPKKRICAKLFDSFNDDTKKIIRRTVHNFFQRNEMPTLDKILQALTENETVPPLSRSTIRNILKQLGFCVEKQGRNHMLLKKPEIVLWRCAYINKSVSIVRSFVTFNIWIRHGLTQDTLCQKFGRIRLSQGRHYINDQDPLRTGAKLITCDSCDYKCRDTFKMKRHKFIHTGEKPYSCGLCLYITGTSSTLKKHLLTHTEKETSSCDRKRRLSADLSNKADEKLFTCGLCDYEGRDRNQLNQHILIHFDRKSLSCDACDFKCRDEIALKNHKLAHTVEAPLSCGLCDYKCRLRTVLKQHLLTHTDVKPFSCNLCDSKFRQKGHLRVHKLIHTGEKPHSCSLCDHKSRSGGDLKKHMESHLDKKYRNTEKTASCGLCDLKFKRLTHLRRHMLTHTNAKPYSCEICHSAFRQSGHLKQHMLIHTGEKPFSCDSCDYKCRSNGDLRRHVKARHS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00465411;
- 90% Identity
- iTF_00465411;
- 80% Identity
- iTF_00465411;