Basic Information

Insect: Dorcus hopei
Gene Symbol: -
Assembly: GCA_033060865.1
Location: CM065425.1:72464843-72468903[+]

Transcription Factor Domain

TF Family: zf-GAGA
Domain: zf-GAGA domain
PFAM: PF09237
TF Group: Zinc-Coordinating Group
Description: Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 0.068 94 4.8 0.0 21 44 51 74 37 79 0.90

2 15 0.031 43 5.8 0.1 21 48 79 105 76 107 0.91

3 15 0.08 1.1e+02 4.5 0.2 18 44 104 130 103 136 0.88

4 15 0.91 1.3e+03 1.1 0.2 23 48 137 161 133 166 0.82

5 15 0.45 6.3e+02 2.1 0.1 20 47 162 189 159 194 0.83

6 15 0.039 55 5.5 0.2 17 44 186 214 168 223 0.80

7 15 0.049 69 5.2 0.0 15 44 227 256 225 262 0.92

8 15 0.018 25 6.6 0.0 21 51 289 319 285 320 0.87

9 15 0.038 53 5.5 0.1 21 44 317 340 315 345 0.90

10 15 0.025 35 6.1 0.1 21 49 345 372 342 376 0.89

11 15 0.031 44 5.8 0.7 21 45 373 397 370 405 0.88

12 15 0.067 94 4.8 0.1 14 44 409 436 399 441 0.83

13 15 0.016 23 6.7 0.0 21 44 441 464 437 470 0.90

14 15 0.012 17 7.1 0.4 21 44 470 493 466 501 0.87

15 15 1.2 1.6e+03 0.8 0.4 21 44 498 521 495 526 0.78

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	0.068	94	4.8	0.0	21	44	51	74	37	79	0.90
2	15	0.031	43	5.8	0.1	21	48	79	105	76	107	0.91
3	15	0.08	1.1e+02	4.5	0.2	18	44	104	130	103	136	0.88
4	15	0.91	1.3e+03	1.1	0.2	23	48	137	161	133	166	0.82
5	15	0.45	6.3e+02	2.1	0.1	20	47	162	189	159	194	0.83
6	15	0.039	55	5.5	0.2	17	44	186	214	168	223	0.80
7	15	0.049	69	5.2	0.0	15	44	227	256	225	262	0.92
8	15	0.018	25	6.6	0.0	21	51	289	319	285	320	0.87
9	15	0.038	53	5.5	0.1	21	44	317	340	315	345	0.90
10	15	0.025	35	6.1	0.1	21	49	345	372	342	376	0.89
11	15	0.031	44	5.8	0.7	21	45	373	397	370	405	0.88
12	15	0.067	94	4.8	0.1	14	44	409	436	399	441	0.83
13	15	0.016	23	6.7	0.0	21	44	441	464	437	470	0.90
14	15	0.012	17	7.1	0.4	21	44	470	493	466	501	0.87
15	15	1.2	1.6e+03	0.8	0.4	21	44	498	521	495	526	0.78

Sequence Information

Coding Sequence: ATGGCGTGTAAGTTAAGGCAAGTTCGCACGGGATCatgCCTACAAATTTCCGAACTTACACTCCTGGACAAAAGACCATACGAATGTCGCgtctgcgattataaattcaaaaatcccGGCCACAGACGTAATCACATGCTgatacataccggcgagaagccgttcaccTGCGAGTTTTGCGGTTACAAAAGCCGACTGGCCGGAAACTTGAAGCAGCACATGCTAACCCATTccgacgagaagccgtacaCTTGTAACGATTGCGGCTTCAAATGTCGACACCGCGGAAACCTCAAACAGCACATGCTGagacacaccggcgagaagccgtacaTTTGCGATCTTTGCGGCTACAAATGCCAACAGGGCACGAGTTTAAGACAGCACATGCTGATACATACCGGCGAAAAGCAATACAAGTGCGATCTTTGCGGTTACGAATGCAATCGGTCGGGAAATTTGAAGATACACTTGTTAAGGCATTCCAACGATAGGCCGTTTAAGTGCGGACGTTGCGAGCACGTGAGCAAGACGGCCGGAAACTTAAAAATACACATGCGAGTGCATTCCGATGAGAAACCGTTCAGGTGCAACGTCTGCGATTACGCGACTAAATGGTCGCCGCACTTGAAGAGGCATATGATGTCGCACGAGGAACTGCTCAGATTTCGATGGCTCCCAAAATCCGAAAGTCCCGACCAGAAACCCTTCAAATGCCACACGTGCGGTACTATGTATAAGTCTTACACCCGCATGCGCCGTCACATGCTGTCGCACACCAACGAGACGGAATTCAGCTGCGACTTTTGCGATTACAAGAACCGCCAGTTCGGAAAGATCCAGAGCcacatgttaacgcacaccggtgagaagccgttcggctgtgatctctgcgattataaatgcagggAATTGGGAAAGTTGAGGCGGCACATGTTGttgcacaccggcgagaagccgttcagttgtgacgtctgcgattacaagtgccgacAACCCGGAAGGTTGAGGGAGCACATGTtgacgcacaccggcgagaagccgttcggttgcgatctctgcgattacaagtgcAGAGAGACCGGAAAGTTGAAGCGGCACAACTTAAGGCACATccgcgagaagccgttcagctgcgatttttgcgattacaaatgccacCAACCCGTAACGTTAAGACGCCACCTATTGATACACAGCGGGCAAAAATCGGAGAAGGGGGAGAAACCGGTTAGTTATGAGAAACCGTATGGTTGTGATTTATGCGATTATAGGAGTCGAGAGGCTGCAAAAttgaaacggcacatgttgacgcacacgggcgagaagccgttcagttgtacTCTTTGCGACTATAAGTGTCGACAATCCGGGAGGTTGAAAGAGCACATGTTCATGCACGTCGGTGGCGAAAAGCCGTTAAGTTGTGACGTTTGCAGTTACAGGTGCCGACAGCCCGCTATGTTGAAGAGGCACATGTTAACGCACGGCAGCGAGAAGCCCCTCGGCTGCGAGCTCTGCGGTTACAGATGTTGTCATCCCTCAACGTTAAAACGGCACGTGTTGAAGCACGCCGGCGAAAAACGCTAG
Protein Sequence: MACKLRQVRTGSCLQISELTLLDKRPYECRVCDYKFKNPGHRRNHMLIHTGEKPFTCEFCGYKSRLAGNLKQHMLTHSDEKPYTCNDCGFKCRHRGNLKQHMLRHTGEKPYICDLCGYKCQQGTSLRQHMLIHTGEKQYKCDLCGYECNRSGNLKIHLLRHSNDRPFKCGRCEHVSKTAGNLKIHMRVHSDEKPFRCNVCDYATKWSPHLKRHMMSHEELLRFRWLPKSESPDQKPFKCHTCGTMYKSYTRMRRHMLSHTNETEFSCDFCDYKNRQFGKIQSHMLTHTGEKPFGCDLCDYKCRELGKLRRHMLLHTGEKPFSCDVCDYKCRQPGRLREHMLTHTGEKPFGCDLCDYKCRETGKLKRHNLRHIREKPFSCDFCDYKCHQPVTLRRHLLIHSGQKSEKGEKPVSYEKPYGCDLCDYRSREAAKLKRHMLTHTGEKPFSCTLCDYKCRQSGRLKEHMFMHVGGEKPLSCDVCSYRCRQPAMLKRHMLTHGSEKPLGCELCGYRCCHPSTLKRHVLKHAGEKR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00465224;
90% Identity: iTF_00465224;
80% Identity: iTF_00465224;