Basic Information

Insect: Dorcus hopei
Gene Symbol: -
Assembly: GCA_033060865.1
Location: CM065422.1:4730533-4734675[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 2e-06 0.00022 23.0 0.3 1 23 151 173 151 173 0.99

2 15 0.00012 0.013 17.4 3.4 1 23 179 201 179 201 0.93

3 15 7.1e-05 0.0079 18.1 4.9 1 23 207 229 207 229 0.99

4 15 2.1e-07 2.4e-05 26.0 1.2 2 23 236 257 235 257 0.97

5 15 1.7e-05 0.0019 20.0 0.2 1 23 263 285 263 285 0.98

6 15 3.7e-06 0.00041 22.1 1.2 1 23 291 313 291 313 0.98

7 15 3.8e-06 0.00042 22.1 0.9 1 23 319 341 319 341 0.98

8 15 1.4e-06 0.00016 23.4 2.1 1 23 347 369 347 369 0.95

9 15 4.9e-06 0.00054 21.7 3.1 1 23 375 397 375 397 0.99

10 15 5.8e-08 6.4e-06 27.8 2.2 1 23 403 425 403 425 0.98

11 15 5.2e-06 0.00058 21.7 0.6 1 23 434 456 434 456 0.97

12 15 3.8e-06 0.00042 22.1 1.3 1 23 462 484 462 484 0.98

13 15 7.5e-06 0.00083 21.2 0.1 1 23 490 512 490 512 0.98

14 15 3.2e-06 0.00035 22.3 1.3 1 23 518 540 518 540 0.99

15 15 7.1e-06 0.00079 21.2 0.2 1 23 546 570 546 570 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	2e-06	0.00022	23.0	0.3	1	23	151	173	151	173	0.99
2	15	0.00012	0.013	17.4	3.4	1	23	179	201	179	201	0.93
3	15	7.1e-05	0.0079	18.1	4.9	1	23	207	229	207	229	0.99
4	15	2.1e-07	2.4e-05	26.0	1.2	2	23	236	257	235	257	0.97
5	15	1.7e-05	0.0019	20.0	0.2	1	23	263	285	263	285	0.98
6	15	3.7e-06	0.00041	22.1	1.2	1	23	291	313	291	313	0.98
7	15	3.8e-06	0.00042	22.1	0.9	1	23	319	341	319	341	0.98
8	15	1.4e-06	0.00016	23.4	2.1	1	23	347	369	347	369	0.95
9	15	4.9e-06	0.00054	21.7	3.1	1	23	375	397	375	397	0.99
10	15	5.8e-08	6.4e-06	27.8	2.2	1	23	403	425	403	425	0.98
11	15	5.2e-06	0.00058	21.7	0.6	1	23	434	456	434	456	0.97
12	15	3.8e-06	0.00042	22.1	1.3	1	23	462	484	462	484	0.98
13	15	7.5e-06	0.00083	21.2	0.1	1	23	490	512	490	512	0.98
14	15	3.2e-06	0.00035	22.3	1.3	1	23	518	540	518	540	0.99
15	15	7.1e-06	0.00079	21.2	0.2	1	23	546	570	546	570	0.94

Sequence Information

Coding Sequence: ATGACGGAAACTATTGACCCCAATAGACTCTGCAGAACGTGTTTGTCACATACGAACGATTTAAAACACATATACGAAAAATCGAGCGCACAcgaaaacataaccttagcgGACATGTTGAAGAGCTGCACTTCTTTAACGTTTTTAGAGAACGACGGCCTGCCGTCGAGCCTGTGCAAGGAGTGCCACTGCCAGTTATTAACTGCGTACGCTTTTAAGAGGAAGTGCGAGGAGGCCGATTCTACGTTACGCACTTGTCTCAtcaacaaaattgaagaggcaAATAATTATGATTGTGGAGATGATGATAACGAagtgattaatcagaatgaggCGGATGTTTTTAATGTGGTTTGTGATGATGGTGTTTCCACAGATTTGGATAGTGCAAGATGTGAAGGTGATACTACCATTGTTGACGATGGTAATGATTTGAAACAGAGAAAGTTGTATGAATGTCAAATTTGTAAAAAGAGTTATGTTCAACGAACGGGCCTCGTCTGGCATATGCGGGTACACACAGGTGAAAGACCCTTTCTGTGTAGTCATTGTGgCAAGGGATTTATCCGCAGCGATGATCTTCTGCGACACTGTCGAGTGCACACAGGTGAGAGGCCCTTTAAGTGCACCATTTGTAAACGAGGTTTCAAGCAGAAGTTCCATTTATCAGAACACGAGCGTTCCCACATCGGCAAGAGGGAACTGTCTTGCAAAGAATGTGGAAAGAGTTTTACGAGATACGGTGTTTTACGCACGCATATGAGGACACACACGGGATTAAAACCTTACACGTGCCCAGTGTGCTCCAAAAGATTCGTCGGATCAGACACCCTTGCGAAACACGTGAAGCTACACACCGGAGAAAAACCCCATTCGTGCAGCGAGTGTGGTCGAAATTTCGCGCAAGTCGATCAGCTTCAGGTGCATTACAGGACGCACACAGGCGAGAAACCTTTCGTCTGCTCGATTTGCTCAAAGGCCTTCACGCAACAGCATGGCCTCAACGTGCACCTACTGAGTCACACCGGCGAACGCCCCTTTTTGTGCGCGACTTGCGGAAAGTCGTTCATTCGATCGGACGACCTGAAGAAGCATCACCGCATACACAGCAAGGAACGGCCTTACACTTGCTCGTTTTGCCCGAAGGCCTTCACTCAGTCCTTCCATCTTTCGGAGCACGTTCGGACTCACACGAACGATAAAGTGTTCTCCTGCAGCATATGCAACAAGACCTTCACCAGGAACGGTTCGCTGCGTTCTCATTTGAGGACGCACACGAAGAGCTACGCGGAAAAACAGTTCGCCTGCAGCATATGCGAAAAGCGCTTCAGCATAAGCTACTCATTGAATAAGCACATGCTGATACACACCGGGGAGAGGCCGTATTCCTGCGATTTATGCGCAAAATCGTTCACCCAATCGGGACACCTAGAAACGCACCTCAAGgtgcacaccggcgagaagccttaCATTTGCCAGGTGTGTGGCAAGGGATTCGCCGTTAGTTCTCGTTTGACCGTGCACGTGAGGACGCATACGGGCGAGAAGCCGTACGTCTGTTCAGTTTGCGGGAAGGGTTGCACCACTTCGACCATGCTCAAGATACATGTCAGGACGCACACCGGTGAGACTCCGTATCCGTGCCCCTCTTGCCCTAAGGCCTTTTCGAGGTCGGATTTGTTGAGTTTACATCGGCGAACGAACGGGCATTAA
Protein Sequence: MTETIDPNRLCRTCLSHTNDLKHIYEKSSAHENITLADMLKSCTSLTFLENDGLPSSLCKECHCQLLTAYAFKRKCEEADSTLRTCLINKIEEANNYDCGDDDNEVINQNEADVFNVVCDDGVSTDLDSARCEGDTTIVDDGNDLKQRKLYECQICKKSYVQRTGLVWHMRVHTGERPFLCSHCGKGFIRSDDLLRHCRVHTGERPFKCTICKRGFKQKFHLSEHERSHIGKRELSCKECGKSFTRYGVLRTHMRTHTGLKPYTCPVCSKRFVGSDTLAKHVKLHTGEKPHSCSECGRNFAQVDQLQVHYRTHTGEKPFVCSICSKAFTQQHGLNVHLLSHTGERPFLCATCGKSFIRSDDLKKHHRIHSKERPYTCSFCPKAFTQSFHLSEHVRTHTNDKVFSCSICNKTFTRNGSLRSHLRTHTKSYAEKQFACSICEKRFSISYSLNKHMLIHTGERPYSCDLCAKSFTQSGHLETHLKVHTGEKPYICQVCGKGFAVSSRLTVHVRTHTGEKPYVCSVCGKGCTTSTMLKIHVRTHTGETPYPCPSCPKAFSRSDLLSLHRRTNGH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01258280;
90% Identity: iTF_01258280;
80% Identity: -