Dhop003926.1
Basic Information
- Insect
- Dorcus hopei
- Gene Symbol
- -
- Assembly
- GCA_033060865.1
- Location
- CM065419.1:10695901-10697496[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 4.5e-09 1.1e-06 29.7 0.1 1 39 15 54 15 57 0.91
Sequence Information
- Coding Sequence
- ATGGTACGAAATTATGTGAAGAAAAGAAGAGAACAGGCGTACACTGAGGAAGACATGGAAGCTGCAATAAGAGCTGTACAGGAGCAACGAATGACTTTGCGAGAAGCCGCTGCAAATTATGGCATGTGTCATACAGCTTTACATTACCGCCTTAAAAAGGTCAATGTGAATGATAATGGAAGTGTGGCCTCTTCTGTTAAGCATgattttcattcaaaatattCTAGTCGGCAAGTATTTACAAAGGATCAAGAATCAGCATTAGTTGAATATGCAATCACTTCATCAAAAATGTGCTACGGCCTTACctacaaacaaatgaaaatcctTGCCTATGATTACgctaagaaattaaaattaaatatgcctGATAGttggaagaaaaataaatcagcTGGGGAAGATTGGCTCTACAGTTTCATGAAGCGACATAAAGATCTCACCATTCGTAAGCCAGAAAATACTTCACTTTCAAGGTTGACTTCATTTAACAAAACTAATGTAGAAACGTTTTTTGATAACTATGAAAGAGCGCTCAAATCCAAAGAGTTTACAGCAGCTAAGATATTTAACCTAGATGAAACTGGGGTTGCGACAGTCCTGCAAGCGCCCAATGTTATTGCTCCAAGAGGTGTTAAACAAGTTGGACAAGCCGTCTCTGCCGAAAGAGGACAATCCATCACTTTATGTATGATTATTAATGCTGCTGGAAACGCATTGCCTCCAGTATTTATATATCCTCGCGCAAGAGTCAATGACGCGATGGTTGAAAATGGTCCACCAGGAAGTATTGTTTTGGCCAATAACCCTGGAAGTCACTGGATGACCCAGACTCTTTTTTTGGACGTTCTTAAACACATCGTTCGTCAGACCAAATGCAGCAAGAATGACCCTATCCTTATCCTCATGGATAATCATGAGAGTCACTGCTCTTTGGAAGCAGTTCAATATGCTCGAGAAAATGGCATAACATTCGTCACATTTCCGCCTCATTGCTCTCACAAACTCCAGCCGCTTGACGTTGGAGTTTTGGGGCCATTTAAAACCAAGACGAAAATAGCACAAAATGACTGGTTGACATGCAATCCTGGCAAAACAATTTCCATACATACACTGCCCTCTTTAGTCAATATTGCGTTTAATTCAGCATTTACAAGGACAAACATAATTTCATCATTTAATAAACCAGGCTTGTGGCCCTTAAACCGTCTAGCGTTCAGTGATGAGGATTTCATGAGCGCAGCTGTATCCGATCGGCCAGTTCCAAATGATAGTATGTCAGATACATCATTCTCATCGACTGTTTTAAATGGTCCTAGCACAGCTGGGTGTAGCAAAGACACTCATACCATCTCACCAGAAACCGATGTTGCTCGTAAGTCTAGTGCAATGCTTTCACCTCACGACATTCGCCCATATCCAAAAGCTCCTGCTAGATCTGCTTCAGCAAAAGgtagaaagaaaggaaaatcgCGCATTCTAACTGAAACCCCTGAAAAGACAAGACTTGAAGAAGAACGAATCGCGAGAGAAGCAAAGAAAAGACAACCTGCAAAATCAAACaacagaaaattaagaaaattaagaagAACATAA
- Protein Sequence
- MVRNYVKKRREQAYTEEDMEAAIRAVQEQRMTLREAAANYGMCHTALHYRLKKVNVNDNGSVASSVKHDFHSKYSSRQVFTKDQESALVEYAITSSKMCYGLTYKQMKILAYDYAKKLKLNMPDSWKKNKSAGEDWLYSFMKRHKDLTIRKPENTSLSRLTSFNKTNVETFFDNYERALKSKEFTAAKIFNLDETGVATVLQAPNVIAPRGVKQVGQAVSAERGQSITLCMIINAAGNALPPVFIYPRARVNDAMVENGPPGSIVLANNPGSHWMTQTLFLDVLKHIVRQTKCSKNDPILILMDNHESHCSLEAVQYARENGITFVTFPPHCSHKLQPLDVGVLGPFKTKTKIAQNDWLTCNPGKTISIHTLPSLVNIAFNSAFTRTNIISSFNKPGLWPLNRLAFSDEDFMSAAVSDRPVPNDSMSDTSFSSTVLNGPSTAGCSKDTHTISPETDVARKSSAMLSPHDIRPYPKAPARSASAKGRKKGKSRILTETPEKTRLEEERIAREAKKRQPAKSNNRKLRKLRRT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00464628;
- 90% Identity
- iTF_00464671;
- 80% Identity
- -