Dhop046615.1
Basic Information
- Insect
- Dorcus hopei
- Gene Symbol
- -
- Assembly
- GCA_033060865.1
- Location
- JAUPFK010000017.1:219639-221646[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 1.8e-10 4.6e-08 34.2 0.1 1 39 15 54 15 57 0.91
Sequence Information
- Coding Sequence
- ATGGTACGAAATTATGTGAAGAAAAGAAGAGAACAGGCGTACACTGAGGAAGACATGGAAGCTGCAATAAGAGCTGTACAGGAGCAACGAATGACTTTGCGAGAAGCCGCTGCAAATTATGGCATATGTCATACAGCTTTACATTACCGCCTTAAAAAGGTCAATGTGAATGATAATGGAAGTGTGGCCTCTTCTGTTAAGCATgattttcattcaaaatattCTAGTCGGCAAGTATTTACAAAGGATCAAGAATCAGCGTTAGTTGAACATGCAATCACTTCATCAAAAATGTGCTACGGCCTTACctacaaacaaatgaaaatcctTGCCTATGATTACgctaagaaattaaaattaaatatgcctGATAGttggaagaaaaataaatcagcTGGGGAAGATTGGCTCTACAGTTTCATGAAGCGACATAAAGATCTCACCATTCGTAAGCCAGAAAATACTTCACTTTCAAGGTTGACTTCATTTAACAAAACTAATGTAGAAACGTTTTTTGATAACTATGAAAGAGCGCTCAAATCCAAAGAGTTTACAGCAGCTAAGATATTTAACCTGGATGAAACTGGGGTTGCGACAGTCCTGCAAGCGCCCAATGTTATTGCTCCAAGAGGTGTTAAACAAGTTGGACAAGCCGTCTCTGCCGAAAGAGGACAATCCATCACTTTATGTATGATTATTAATGCTGCTGGAAACGCGTTGCCTCCAGTATTTATATATCCTCACGCAAGAGTTAATGACGCGATGGTTGAAAATGGTCCACCAGGAAGTATTGTTTTGGCCAATAACCCTGGAAGTCACTGGATGACCCAGACTCTTTTTTTGGACGTTCTTAAACACATCGTTCGTCAGACCAAATGCAGCAAGAATGACCCTATCCTTATCCTCATGGATAATCATGAGAATCACTGCTCTTTGGAAGCAGTTCAATATGCTCGAGAAAATGGCATAACATTCGTCACATTTCCGCCTCATTGCTCTCACAAACTCCAGCCGCTTGACGTTGGAGTTTTGGGGCCATTTAAAACCAAGACGAAAATAGCACAAAATGACTGGTTGACATGCAATCCTGGCAAAACAATTTCCATACATACACTGCCCTCTTTAGTCAATATTGCGTTTAATTCAGCATTTACAAGGACAAACATAATTTCATCATTTAATAAACCAGGCTTGTGGCCCTTAAACCGTCTAGCGTTCAGTGATGAGGATTTCATGAGCGCAGCTGTATCCGATCGGCCAGTTCCAAATGATAGTATGTCAGATACATCATTCTCATCGACTGTTTTAAATGGTCCAAGCACAGCTGGGTGTAGCAAAGACACTCATACCACCTCACCAGAAACCGATGTTGCTCGTAAGTCTAGTGCAATGCTTTCACCTCACGACATTCGCCCATATCCAAAAGCTCCTGCTAGATCTGCTTCAGCAAAAGAAGAACGAATCGCGAGAGAAGCAAAGAAAAGACAACCTGCAAAAATCAAACaacagaaaattaagaaaattaagaagAACATAAACGAAACTTTATTTGATCATAATCGACCTGTTGAGTCTGATACTTTGTCTGAAAGCATGTCTATTCATGATGAATCCTCAGATGAAATGGAAGCGTTCAGCGATTTAGAGAATCAAGATTCCGATTCTAGGGATTTCAAAATAAACGATTTTATTCTCGTCTCATTTGCTACCAAGAAATCTCGATTATTGTTTGTGGGCCAAATTGAAGCTATATTTGAAGAAggttttaaagtaaaattcatGCGGAGGAAAGACGATATGTGGAAATTTTTCTTCCCAGAAAAAGATGATATCAGTGTGATAGAGAAAGAAGATATTAGGTTGAAGCTTCCTACGCCTGACGTAGTCGGCGGAACTGCAAGAGCTGTGTCTGTCTTATCTTTTGGTATAGATTTTTCTACTATTAAggataaaataatgtaa
- Protein Sequence
- MVRNYVKKRREQAYTEEDMEAAIRAVQEQRMTLREAAANYGICHTALHYRLKKVNVNDNGSVASSVKHDFHSKYSSRQVFTKDQESALVEHAITSSKMCYGLTYKQMKILAYDYAKKLKLNMPDSWKKNKSAGEDWLYSFMKRHKDLTIRKPENTSLSRLTSFNKTNVETFFDNYERALKSKEFTAAKIFNLDETGVATVLQAPNVIAPRGVKQVGQAVSAERGQSITLCMIINAAGNALPPVFIYPHARVNDAMVENGPPGSIVLANNPGSHWMTQTLFLDVLKHIVRQTKCSKNDPILILMDNHENHCSLEAVQYARENGITFVTFPPHCSHKLQPLDVGVLGPFKTKTKIAQNDWLTCNPGKTISIHTLPSLVNIAFNSAFTRTNIISSFNKPGLWPLNRLAFSDEDFMSAAVSDRPVPNDSMSDTSFSSTVLNGPSTAGCSKDTHTTSPETDVARKSSAMLSPHDIRPYPKAPARSASAKEERIAREAKKRQPAKIKQQKIKKIKKNINETLFDHNRPVESDTLSESMSIHDESSDEMEAFSDLENQDSDSRDFKINDFILVSFATKKSRLLFVGQIEAIFEEGFKVKFMRRKDDMWKFFFPEKDDISVIEKEDIRLKLPTPDVVGGTARAVSVLSFGIDFSTIKDKIM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00464671; iTF_00466025; iTF_00464746; iTF_00466027; iTF_00464661;
- 90% Identity
- iTF_00464671;
- 80% Identity
- -