Dhop035514.1
Basic Information
- Insect
- Dorcus hopei
- Gene Symbol
- bab1
- Assembly
- GCA_033060865.1
- Location
- CM065425.1:61143943-61176558[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 4.6e-11 1.2e-08 36.0 0.0 1 39 381 420 381 424 0.90 2 4 4.3e-12 1.1e-09 39.3 0.1 1 39 435 473 435 476 0.95 3 4 1.1e-17 2.8e-15 57.2 0.0 1 45 490 535 490 535 0.98 4 4 1.5e-15 3.7e-13 50.4 0.1 1 40 542 582 542 586 0.93
Sequence Information
- Coding Sequence
- ATGTCTGGTCAACACTATTGCCTGCGCTGGAACAATTACCAAAGTAACATGACCACGGTATTTCATCAACTGTTACAGAATGAAGCCTTCGTGGACGTAACCCTAGCCTGTAACGATCTGTCGTTGAAAGCACACAAGGTAGTTCTGTCGGCGTGCTCCTCGTACTTTCAAAAACTCCTTCTAGAAAACCCCTGCAAACATCCCACGATCATAATGCCGCAAGACATCTGCTACGCCGATCTCAAATTCATCATCGAGTTCGTTTACAAAGGAGAAATCGACGTTTCCCAAGCGGAGTTGCAGTCCCTGTTAAAAACAGCCGATCAGCTCAAGATTAAAGGCCTGTGCGAGTCAcctgaagaaaaagaaaactccGAGACCGCAGCCTTCCCCTTCATAACGAGAGGCTTCCCCAAACTGAGGAGGGTAGCATCTCCGAAACAGTTCAAGCCCTTGGATAACAACCGGAAATTAAAGTACAAGAAACCGGAGAGGAAGCGCACTCCGGAAAACGAAGACAAAGATAACAAAGACAGCGTCATCGTCAGTAATTCGTCCGAGGACGAAAATGAAATGCCAATAGCCCTGGACGAGGAGAGCAGAAAGAGGAAATTAAGCGAATCCCAAAGTAAACCGCTGAATATGAGTAGTCATGCGGGTATTTTGACAGGACAGACTTTCTCCTTCTCCCAGTTCGGTGTGGACAATGAAGACTTTCCTCCAGAACCGCCGGCCCCAACGGCCATACCCGTCGGGAACGTAGACATGGAACACTCACCGACGAGATCGCTCCTCACCAACTCGTCCATTCACAGAACCGACCTGTCAGATTCGCACATAAAATACAGCGAAATTAAAAAGGAGCCGGACATTAAGTTCGAAACGTTGCGCTCTTACGACCAAGAATCCTTGTTGGACATGGAGGGCTCACACATGTCCGGTCCGGATCATTCGATGGACAGTCACGATGATCCGGAACACGGAATGCACACGATGATGATCACGCCGGAACTAATGGGTATGATGTCAACGATACCATCCAGATTAGATTCGAGTTGTAATGACATGTCCATGAAGAGTAACGGACATACGGACCAACACTCAACTGGAAGGGCACACGGCGGAGGACCAAAGACGTGGACGCAAGAAGACATGGAGTTGGCATTAGATGCCTTAAGAAATCATAATATGAGTCTGACAAAAGCGTCAGCGACATACGGAATTCCATCCACGACGCTCTGGCAGAGGGCGCACAGGTTAGGCATAGACACACCAAAGAAGGAGGGCCCAACGAAATCGTGGACCGAAGAGAACCTCAACTCGGCACTCGAAGCCTTGAGGACGGGGACAATATCCGCAAACAAAGCCAGCAAGGCGTACGGCATACCAAGTAGCACACTGTATAAAATAGCCAGGCGGGAAGGCATAAGATTAGCGGCGCCTTTTAATGCAGCTCCGACGACGTGGACGCCGGAAGACTTAGAAAAGGCCTTGGAGTCGATTAGATCTGGTCAGACATCCGTGCAAAGGGCTTCCACGGAATTTGGAATACCAACGGGGACGTTATATGGGCGGTGTAAGAGGGAAGGCATCGAGCTTTCAAGGTCGAATCCTACACCGTGGTCGGAAGATGCTATGGGCGAAGCGTTAGAGGCTGTTAGGTTAGGACACATGTCAATAAATCAGGCAGCAATACACTATAACCTGCCATATTCTTCTCTGTACGGAAGGTTCAAGCGAGGCATAAAATACGAAGCCGAAAACCTAGAATCCAACTCAGACAGCCAGTCGCACCTGGACGCGCAAGCCCACATGATGGACTACTCCAACTCCCATCAACAAATTTCGTATCAACAGCACCCGGCGAACAGCTGA
- Protein Sequence
- MSGQHYCLRWNNYQSNMTTVFHQLLQNEAFVDVTLACNDLSLKAHKVVLSACSSYFQKLLLENPCKHPTIIMPQDICYADLKFIIEFVYKGEIDVSQAELQSLLKTADQLKIKGLCESPEEKENSETAAFPFITRGFPKLRRVASPKQFKPLDNNRKLKYKKPERKRTPENEDKDNKDSVIVSNSSEDENEMPIALDEESRKRKLSESQSKPLNMSSHAGILTGQTFSFSQFGVDNEDFPPEPPAPTAIPVGNVDMEHSPTRSLLTNSSIHRTDLSDSHIKYSEIKKEPDIKFETLRSYDQESLLDMEGSHMSGPDHSMDSHDDPEHGMHTMMITPELMGMMSTIPSRLDSSCNDMSMKSNGHTDQHSTGRAHGGGPKTWTQEDMELALDALRNHNMSLTKASATYGIPSTTLWQRAHRLGIDTPKKEGPTKSWTEENLNSALEALRTGTISANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPTTWTPEDLEKALESIRSGQTSVQRASTEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMGEALEAVRLGHMSINQAAIHYNLPYSSLYGRFKRGIKYEAENLESNSDSQSHLDAQAHMMDYSNSHQQISYQQHPANS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00980857;
- 90% Identity
- iTF_00465076;
- 80% Identity
- iTF_00465076;