Dvas027978.1
Basic Information
- Insect
- Dolichoris vasculosae
- Gene Symbol
- -
- Assembly
- GCA_018907195.1
- Location
- JACCHY010000004.1:13476759-13482109[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 8.7 2.1e+03 0.9 6.0 2 23 221 243 220 243 0.96 2 20 0.29 72 5.5 5.8 1 23 316 338 316 338 0.97 3 20 0.00059 0.14 14.0 0.3 1 23 387 409 387 409 0.97 4 20 0.018 4.4 9.4 0.4 1 20 464 483 464 485 0.93 5 20 0.0028 0.68 11.9 2.8 2 23 526 547 525 547 0.96 6 20 0.00062 0.15 13.9 0.1 1 23 589 611 589 611 0.97 7 20 0.00034 0.083 14.8 0.1 1 23 617 639 617 639 0.97 8 20 2.2e-06 0.00055 21.6 4.1 1 23 679 702 679 702 0.96 9 20 0.00027 0.066 15.1 0.3 2 23 710 732 709 732 0.96 10 20 0.00012 0.028 16.2 0.7 2 19 759 776 758 781 0.89 11 20 0.0003 0.073 14.9 1.5 1 23 812 834 812 834 0.93 12 20 0.1 24 7.0 0.0 2 20 892 910 891 910 0.95 13 20 0.0094 2.3 10.2 0.2 2 23 929 950 928 950 0.97 14 20 0.00096 0.23 13.4 3.8 1 23 976 998 976 998 0.97 15 20 0.012 3 9.9 3.0 3 21 1019 1037 1018 1041 0.89 16 20 0.15 38 6.4 0.2 2 23 1098 1120 1097 1120 0.93 17 20 0.011 2.7 10.0 2.9 3 23 1150 1171 1148 1171 0.89 18 20 0.0021 0.51 12.3 0.9 1 23 1178 1202 1178 1202 0.93 19 20 0.067 16 7.5 2.0 1 23 1207 1230 1207 1230 0.94 20 20 0.0064 1.6 10.8 0.4 3 23 1262 1283 1260 1283 0.95
Sequence Information
- Coding Sequence
- ATGGACGACGTCGTGGAGATCAGCGGTTTGGAAAATGCCTGCAGATTGTGTCTTACCACGGAGCAAACGAGGTCGTCGATTTTCGGCGTGCCTCACGTATCCGTGCCCTTCGTCGATAAGATTCGTGCCTGCTTGTCGATACAGATCTCATCTAATGATAAACTATCAACTTTAGTGTGCACATCTTGTATTAAAAATATAAATCAATGGCATTCTTACAAAGATACTTGTCTGCGATCTCAAGAGAAACTTCAACAATGGTTAGCGAAACAGAATACGATCATTCATCCAATGGTGACTGTAAAAGAAGAACCAGTAGATGTAGAATTTCAAGATGACAATTCGCACAATATTACCAATGATTCTGATACAAATCCTCCAAAAATTAATGACAAAATTGAGAAAGATTCTTCAACGATTCAAATTAAAACCGAACCTGTAGATACAGAAGATGAAGATGATTGTAATGTAGATGTTGAATCTGTTAACAGTGGAGAACTCTTGATCAATCCAATGGCAGTAGTAGCCAGTAATGGCAGTAATGACAGAATCATGGAGGCGGATTCGACTCAAAAGTTTGGCACAAGGAGGTTTGGGGGAAGAAAGAGAATGCGCCGTGGACCTCATACTCATTATAGGGGTATTCGATTATTCAAAAAAAAGTGTGTTCACTGTAAAATTTATTTACATTCTAAATATTCGTACTCCCAACATATGTCCCGATATCATGGAATTGTTAATAATTTAGCTAATGATTTTGTGAAACCAGCAAGTCAGCCACTAATAAAAAAACAAAAATCAAAACTTTCATTTCACACAGATAATACCGAAACTGGTACAGATGTGCAAAATGAAGCTAGTATTGAAGATTTAGAATTTGAGAAAATGATAAAAACTGATCCTCTAATACCAGTTCAAAAAACGATTATTAGTCAATTAAAGACGTTTTCTTGTTATTCTTGTAAGCAAACTTTCTTTGATCGAAGGCATACTTTAAATCATATTAGACAGCACATGCCTGATCTGCGACCTTTCACTTGCATTGCTTGCCTCACTGAATTTTCAGATAGGTCCATGTATAAGCTTCACTGTGGAGCTTCATTCGAGTGCGCCATGAAAATAGCTCTTGTAGTTCCAAAAGTAGGCAATGAAAAATATTTCACTTGCAATATGTGTCTTCGACCCTTCGATAATAGAAAAGAGCTTCTTTCGCACTTAGCCATACATGCCGATAAACAATATCAGCAATTGGCTCAACCTTTAAGATCTCCACCAAAATTAAAACCGATAAGTCCATCTGTGCCAGCTCCTAAGGTTGATTCTTCACCTGTTAAAAAACCCATTGTTACTGTATCTGGACCTTATATGAACGGTGATCCAGCTCATAATCATATGTGTGATCTATGTGGTATGATTTACAGGTACAAACCTAATATGTTCAAACATCGTGAACTCTGCTCTACTTTACCCGAGAATATCAGAACCTCCTACAGATGCATCCACTGTAATATGACATATCTCGTGTACAAGAAGTTCTATACTCACGTATTAAATGATCATAAAAAACGCGAAATTGTATGCTTTACGTGTCATGAGAAGTTTACTACTCCCGATGACTATCTTAGTCATCACGAAACGCATCGCGTTCACATAGATAAGGAAAATGTGAATGAAACCGCAAACGAGCAGCAACCGGTTAACGAGTATTCGATAACAGATCCTTTGAATTCTTCCACACATCGAATGGACGTTAGCGAGAAGCCTTTTAATTGTGCACTATGCGGGGAAGATTTCGTTACGAAGATCGAGCTTACCGAACACCGTAACCTTCATCTCAAAGTTAAAATCTATTCGTGTGTAATATGCCGTAGTATGTTCAGTAGCTCAGGAGCGCTAGAAGTACACATGAAGGATCACGGAATTGAAGATCCTGGTGAACAGAATGCTAATAGCTCTTGCGTCGAATACGGACGTGAAAGTCGCTCTCAAACTGCACTAAATGATTCATCCGCTTCGGATCCTGGCGGATGTTTCCATTACTGCCACGAGTGCGGTAAAAACTTTTCCAATCTTGCGAATTTAAAAAGACACGAACGTAATTTACACGCCAAGCAGAGGCGTCGCTGGAGTTGTGACGATTGTAAGAGACGCTTCAAGTCCGTTGAAGCATACAACGAGCATGTTAGAACGGAGCATAGGCCAAATCAGCAACATCCTGAAAAAATATTGGCATCGCCACCTCAGTTGTCTTCGACCACAGGTAAACCTCTGATGCAGTGCCCAAAGTGTCCCAAAACCTTCGCTTATCAAGGTAACCTTATCGTTCACTGCCAGAACGTGCACAAGGAGAACCATTTTGAGCGTGCACGAGCAAACGCGGCGCGTCCCGCGGCTCCTCCCACTCGAGCTGGTGCTACTGTTACACCTTGGGGTCATTCTTGCGATCTTTGTGGTAAGACATTCCGAGAGGAACAGTCTCTTAAGACTCATCGCGGTTGGCATTTGCGTTCCACCTATCGTCTCAAGGTAGACAAGAACGCGAGTTTGGACGAGACAACACTCAGTGGTCCGGGTTACACGATGACGATGACGAGTTCGATAAAGCCTGCTAAGGCGCGTAAGTCCTTTCCGAACAACCCTCCTCAAAAACAAATAAACACCATAACGAGTCTTCAGTGTCAGGTCTGCGATGATCGCTTTCCCGACGTCGCTGAGTTAAGAAAACATCTATGGGACGTTCATTGTGCTCGCAATAAGCCAGAGAAGTCTTTCACAAGTGAATTACAGTGCGAGCTTTGCACCAACAAGTTTCCCGATGATCAGTCCTTGGTGAATCACATGAAGTGGCATTCGCAGAATCCGATCCTTGGGGGTAACAGCGCTAGCACCGACAGTAGCAATAACCTCGACGTCGCTACTAAATCCTTCTACTGCGATACCTGTGGCAAATACTATAGCAATCGCAAACTCTTTCTACGTCACAAGAAACTTCACAAGGTTTTACCCGCGACAACGATGATGAACCTTCAGTCTCTGCAAACAAAGCGGCCTTTCTGCCAATCCTGTCAAAAGAGCTTCTCCACGGACGCATCCCTCAAGCGGCACAAAGCATCACCCTGCCATCACAGCGTTGTGCGCACTCAGGGTCAGCATGGCCCCAAGAAGATAACGACCACGGCACTGGTTCACCACCCACCCTCGGAGCCGGTGAGGCTGCAGGCAGTCAAGAGAGAACCGGGTCTCGATTACGGAGGCCAGACGAGTGTGCAGAATACGAGAAAGAAGCCAGTTACTTGCCTTATATGCAAGACTATCTTCCCAAATATGAGTGTGCTCTACCAGCACAAGCAGCTCGTACATAAACTCCCGACCAGCGGCAGGGACAGGGCTAATAGTCAGCAGCAGAATGAGTGCGTACCGTTGGTGAGTGCCGAGGGTCTCGTCTGCTGCAACTTGTGCGGCAAGCAGTTCCCAGGCGTTTCGAACCTCAAGCAGCACTTTGCCCATAAACACAAGGCCAAAAGCGCAACCTTCCCCTGCAGGTCGCCAGGCTGTAAGCTTGTCTTCAGCAGCGCCCATTCGCTCAAAAGTCACGAGACGACGCACTCGAGCATGATTTACAATTGCCATTTGTGCGACGGCCACGTATTCTCCAGGGCCGCCATGACAAAGCATATGATAACTATGCATAAAGCAATATATCAATCCGGGGCAAGCAAGAGTAGCCTTTGGTCCGAGACGGATTTGACGACTTATAACGTAAAAAACTGCCAAAGCACGGCCTGCCCTAAGTGCAAGATTAAATATCCTAATTTGAGAGCGCTGAAAATTCACTATCTCAAGTTTCACGAGAAAACATAG
- Protein Sequence
- MDDVVEISGLENACRLCLTTEQTRSSIFGVPHVSVPFVDKIRACLSIQISSNDKLSTLVCTSCIKNINQWHSYKDTCLRSQEKLQQWLAKQNTIIHPMVTVKEEPVDVEFQDDNSHNITNDSDTNPPKINDKIEKDSSTIQIKTEPVDTEDEDDCNVDVESVNSGELLINPMAVVASNGSNDRIMEADSTQKFGTRRFGGRKRMRRGPHTHYRGIRLFKKKCVHCKIYLHSKYSYSQHMSRYHGIVNNLANDFVKPASQPLIKKQKSKLSFHTDNTETGTDVQNEASIEDLEFEKMIKTDPLIPVQKTIISQLKTFSCYSCKQTFFDRRHTLNHIRQHMPDLRPFTCIACLTEFSDRSMYKLHCGASFECAMKIALVVPKVGNEKYFTCNMCLRPFDNRKELLSHLAIHADKQYQQLAQPLRSPPKLKPISPSVPAPKVDSSPVKKPIVTVSGPYMNGDPAHNHMCDLCGMIYRYKPNMFKHRELCSTLPENIRTSYRCIHCNMTYLVYKKFYTHVLNDHKKREIVCFTCHEKFTTPDDYLSHHETHRVHIDKENVNETANEQQPVNEYSITDPLNSSTHRMDVSEKPFNCALCGEDFVTKIELTEHRNLHLKVKIYSCVICRSMFSSSGALEVHMKDHGIEDPGEQNANSSCVEYGRESRSQTALNDSSASDPGGCFHYCHECGKNFSNLANLKRHERNLHAKQRRRWSCDDCKRRFKSVEAYNEHVRTEHRPNQQHPEKILASPPQLSSTTGKPLMQCPKCPKTFAYQGNLIVHCQNVHKENHFERARANAARPAAPPTRAGATVTPWGHSCDLCGKTFREEQSLKTHRGWHLRSTYRLKVDKNASLDETTLSGPGYTMTMTSSIKPAKARKSFPNNPPQKQINTITSLQCQVCDDRFPDVAELRKHLWDVHCARNKPEKSFTSELQCELCTNKFPDDQSLVNHMKWHSQNPILGGNSASTDSSNNLDVATKSFYCDTCGKYYSNRKLFLRHKKLHKVLPATTMMNLQSLQTKRPFCQSCQKSFSTDASLKRHKASPCHHSVVRTQGQHGPKKITTTALVHHPPSEPVRLQAVKREPGLDYGGQTSVQNTRKKPVTCLICKTIFPNMSVLYQHKQLVHKLPTSGRDRANSQQQNECVPLVSAEGLVCCNLCGKQFPGVSNLKQHFAHKHKAKSATFPCRSPGCKLVFSSAHSLKSHETTHSSMIYNCHLCDGHVFSRAAMTKHMITMHKAIYQSGASKSSLWSETDLTTYNVKNCQSTACPKCKIKYPNLRALKIHYLKFHEKT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00305786;
- 90% Identity
- -
- 80% Identity
- -