Basic Information

Insect: Diuraphis noxia
Gene Symbol: L_1
Assembly: GCA_001186385.1
Location: NW:560176-686190[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 22 2.5e-06 0.00017 21.3 1.2 1 23 167 189 167 189 0.98

2 22 1.4 93 3.3 7.0 1 23 195 217 195 217 0.97

3 22 5.5e-07 3.8e-05 23.4 5.6 1 23 223 245 223 245 0.99

4 22 6.9e-06 0.00048 19.9 0.9 1 23 251 273 251 274 0.96

5 22 0.0001 0.0071 16.2 2.0 1 23 291 313 291 314 0.96

6 22 0.0056 0.39 10.8 0.7 1 23 338 361 338 361 0.97

7 22 2.4 1.7e+02 2.5 1.0 1 23 399 422 399 422 0.94

8 22 0.015 1 9.4 0.7 2 23 609 630 608 630 0.93

9 22 0.00011 0.0078 16.1 1.5 1 23 638 661 638 661 0.96

10 22 0.00013 0.0088 15.9 0.6 1 23 666 689 666 689 0.95

11 22 0.00051 0.035 14.1 0.8 2 23 739 760 738 760 0.96

12 22 0.064 4.4 7.4 3.6 1 23 764 786 764 787 0.96

13 22 0.72 50 4.1 0.3 3 23 831 853 829 853 0.86

14 22 0.00086 0.059 13.3 4.7 2 23 867 888 866 888 0.96

15 22 0.0021 0.15 12.1 0.3 1 23 898 920 898 920 0.98

16 22 0.69 47 4.2 6.3 2 23 928 949 927 949 0.97

17 22 0.0021 0.15 12.1 0.1 2 23 1024 1046 1024 1046 0.97

18 22 0.11 7.3 6.7 1.3 1 23 1050 1072 1050 1072 0.97

19 22 0.055 3.8 7.6 0.1 2 23 1084 1105 1083 1105 0.95

20 22 0.0063 0.44 10.6 0.0 1 23 1113 1136 1113 1136 0.96

21 22 0.44 30 4.8 0.2 1 23 1143 1167 1143 1167 0.94

22 22 7.1 4.9e+02 1.0 4.4 1 22 1194 1215 1194 1217 0.87

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	22	2.5e-06	0.00017	21.3	1.2	1	23	167	189	167	189	0.98
2	22	1.4	93	3.3	7.0	1	23	195	217	195	217	0.97
3	22	5.5e-07	3.8e-05	23.4	5.6	1	23	223	245	223	245	0.99
4	22	6.9e-06	0.00048	19.9	0.9	1	23	251	273	251	274	0.96
5	22	0.0001	0.0071	16.2	2.0	1	23	291	313	291	314	0.96
6	22	0.0056	0.39	10.8	0.7	1	23	338	361	338	361	0.97
7	22	2.4	1.7e+02	2.5	1.0	1	23	399	422	399	422	0.94
8	22	0.015	1	9.4	0.7	2	23	609	630	608	630	0.93
9	22	0.00011	0.0078	16.1	1.5	1	23	638	661	638	661	0.96
10	22	0.00013	0.0088	15.9	0.6	1	23	666	689	666	689	0.95
11	22	0.00051	0.035	14.1	0.8	2	23	739	760	738	760	0.96
12	22	0.064	4.4	7.4	3.6	1	23	764	786	764	787	0.96
13	22	0.72	50	4.1	0.3	3	23	831	853	829	853	0.86
14	22	0.00086	0.059	13.3	4.7	2	23	867	888	866	888	0.96
15	22	0.0021	0.15	12.1	0.3	1	23	898	920	898	920	0.98
16	22	0.69	47	4.2	6.3	2	23	928	949	927	949	0.97
17	22	0.0021	0.15	12.1	0.1	2	23	1024	1046	1024	1046	0.97
18	22	0.11	7.3	6.7	1.3	1	23	1050	1072	1050	1072	0.97
19	22	0.055	3.8	7.6	0.1	2	23	1084	1105	1083	1105	0.95
20	22	0.0063	0.44	10.6	0.0	1	23	1113	1136	1113	1136	0.96
21	22	0.44	30	4.8	0.2	1	23	1143	1167	1143	1167	0.94
22	22	7.1	4.9e+02	1.0	4.4	1	22	1194	1215	1194	1217	0.87

Sequence Information

Coding Sequence: ATGTCTAGGAGGAAACAGGCTACACCTCGTTCGCTGAGACaTGGAAATCTTGACGCGGAAGACGTATTTGACGACGAAGACCTCGTGCCTCCACTATCTCCTACAGGGTCAGGAAGTACGAAAAGCGACGAAGACGAAGGAGACGAAGACGAAGAAGAAGAGTGCActgttgatgatgatgatgacgtcgacgacgacgatgacgtcGACGACGACTTGCAGTCGGTCAGTTCTACTGAAGGATCAAATCACAGTCTGCTTTccgAAGCACTGAGTGGCGCGGGCGAGGCGAGCACCGAAGAGGCAGCTTCGTCGTGGAGCTCGGCCGTGTCAGAGGACCACACGTCGCCGGACAGCTGCGCCACGAGCAACAGCCGGCCCGGTTCCACGGTCGACCACCGACGCGATCGCCACAGCCGTCCACCGTCGTACGCCACGGCCGGCGCCGCTGCCGTCGCCGCTGTTACAGCCGCAGCGAACGCCACCGACACCAACCCGTACGCATGCCAATACTGCGACAAGACGTTTCCCCGGGGAAGCTATCTGAAAAAACACGAACAGACTCATGGAGAATCAATGCCGTTCAAATGTCAATTCTGCCGGAGGCTGTTCAAACACAAGCGCAGCCGAGACCGGCACGTGAAATTACACACGGGGGACAAGAAGTACAARTGTACTCAATGTGACCATGCTTTTTCAAGGAGCGATCACTTGAAGATCCACATGAAAACGCACGACAATCAAAAACCGTTCCAGTGTACGGTTTGCAACAGAGGTTACAGCACGGCGGCCGCGCTCACGTCGCACATGCAAAACCATCACAAACGSGCTGCGGAACGGGCCAACTCGCCACAGATATCAGGCCCCTCGTACAAGTGCCTCCAGTGCACGCAGATATTCCGCAAACCCGACGAACTCCAGAATCACACTGCGACGCATCATCTTGGGGAGCAACTTTCGTCCAACTCACGGAGCTCGAAACGTTCGACACCGCCAAAAACGCCYAACCAATACATTTGCATGTACTGCACCAAAGAAGTGTCCAGCATGGACGCGTTGCAACAACACTTCCAGACCAAACATTCTGCGATCGTCAATGGCAAGCAGCAAGAGGACATCTTCTCGGCCGTACCACCGGCGGCCGCGTTCCCGTGGCTCAACTTTGCCGACTCACCCGCCCTGGCCCTACCACCGTACTCGTGTAGGTTGTGTATGAGCCAATTCCCGTCCGTCACTTCGTTACAAAAACACTTTACGACCGCCCACTATCTGAATTCCGTCCTCAACAACAACATACcgaacaacaataacaacaacagcaacaacaacaacaacaccaaCGGGTGCAAAAGTGGCGGTGGCGGCTTGGTGCCGATGTTCAACTGGCCGGCAATGTCTGGCGCAAACGGATACCATCACCACCGCCACTCGACGCCRGCCGGCGGTGGTGGTTTCTTGCTCGAGGAAACCGTTCAGACAGGTCCCACAGACTTGTCGCTGTCCTCATCCAAGCACGGCGGCGGTAAGCACCATCACACGTCATCGGGCAAACACAAGTCGGCGGACGACCAGCGGAACCACGCGACCAGCAAAAAGTCCCGTTCGTCACCAGGACGCGATCTGTCGGCGGCCGACCAGCAACGTCACATAAAACAAGAACGCGTCGGTAGTCACAACGCGTATGACAGCAAACACCTGCAGCAGCCGAGGCCGACCACGACTCGCCCGCCTTCGCAGTTAGGCATCTCCaaccacaacaacaacaataacaacaaccaCAGCATTAACAACAACAGCATTCACGCTGACAACAAGATCCAATTGCCGTGTCCGCATTGTCATCTGACGTTCGCGCTCTTCGAAGACTACCAGCAGCACGTTATCGGGCACTTCCTGATGGCCGCAGCCGAGTACTCGTGCCAGGAGTGTTCCACTTCGTTCGCCACGTCCGAACACGTCCAGAAACACCTGATGGAAACGCACGCGCAGAACTTTTACCGGTGCATGCTGTGCAAAGAAGTGTTCCCGACCAAGTCGGCGCTCAAAGTGCATTTCAGCATGAACCATGGCAGYGAACACCGCATGTTCCGCTGTAACAACTGCACGGGCCTGTCTCGGCCGCTGTTCCAGACGGAAATCGAGTTCATCGATCATTTACGCAACACCCATTACTCCGCGAGATCGCCTCCACCGGTCCAAGCGAACCTGATGTTGAGGTGTTTGGTGTGCCACGCCACGTTTAACACGCAGTCCGACATGGAACAACATTTAGCTAGTCACTCCAAACAGTTCCAATGCCAATTCTGTTCGGAAGCGTTCCACATCGAGTTYTTGTTGGACAGACACATTCAAACGCATCACAGTTCGAGCATTTTGAGTCACCTTAATCGGAACCACAGGGAATCGCCGAGTTCCATGTGCACGTCTCCAACGTACATTTCCCGGACGTCAGACGGCAGTAAACATGCGACGGAGAACGGGACGACCGCTTGTGATATATGCGAGAAAAACGATTTTCGAAATGAGCTGGACCTAATGGCCCACAAGAGGACGATGCACCAGGTGAAACCTACAAATCTTTCGACAAAAGTGAGCTTACATTGCGCTTATTGCAACGAAAACTGCAAATCGAGAACAGATCTGGAGAACCATATGAAAACGCATTCGCAACACGGTTCTAATGTCGGAAAGCACAAATGCAACATTTGTGACGAAATCTATCAATCCGCGATCAGCTTGGCCGAACACAAACTCACTCACTGCAAGGTGGCCACGAGTACCGTGTGCAGTCACTGCAAGATGACGATCGACAACGAGGATCAGTTCCACCATCACCTCCAGAAGCACTGCAACCCGGTGAACGCGAACGGCAACCAAGTGGCGTTTCCCACGTCTTGCATCATATGCAGGCAAACGCTCGTGTCGGACATCGAGGTGAAGGTGCACGTGCATTATCACCTGTCTCGGCTCAAGGAACCTCCGGCCGTGTGCGGCAACTGCAACCGGTACAAGCGGTCGGCGTCGTCCCCGTGCACCGGCTGCAACCCGGCCAGGAACAGCGGATCGGAACGGTGTCCGGACTGCGGTGCGGCGTTTGACGCTTTCGGCGCGCTGCAACATCACCTGACAACTGTCCACAGGAAACCGTTTCACTGTTTTAAGTGCAAGATCGGGTTCGAGTCGCAGCAGGAGGCCACGATCCACTTGGGCACCCACCTGGCCACGCTCAACGGTTCCGTGGACGGCATCGAATGCGGCCTGTGCCCGTGCGTTCTGCCCACGGCCAACAGCCTCCAGACGCACCTGATCGAGCACACGTTCGCCGGCTGCAAGGCGTTCACTTGCTACCTGTGCTCGGCCATATTCACCGCACCCACCGGACTCCAGGCGCACATGACCGTCGACCATTCGGCCGAAACGCCGCCGTACGACTGCCCCAGGCCCGGATGCCAGGCCAAGTTCTTCTTCACCGCCGAACTGGACAGGCACACGCTCGAGCACCAGGGACAGGACGTGCTGGCCAACATGAACTTCTACAAATATCAAAACAAGCTGATGTCCATCTGCGATAAGTTATCGTTCAAGTGCGCAGATTGTTATCAGAGCTTTTTGACCCAAACCGACTTGCAGTGTCACGTGTATGACCACCATCGGCAGCAGAAAGACGCACCGCCGACGGGACCGGAATCAAAAGACGTCAAACAGGAAATGAGCGGATGCGTGGTTAACGGTAACGCGGATGAATCACAGCTTTTGGGTGGATGCGAACGGGCTGATAACCCAATCAAAGAGGAGGAAGATGGGAACGAGGTGAACGTGAAAACGGAACATCATGAAAAGGACGACGAGGACGAAGAGATGATCGATGTAGGTGTGAACAACCGTGGCGAATYAAAGTCGGGAGACGATGAAGAAGACGTGGACATGCGTTGA
Protein Sequence: MSRRKQATPRSLRHGNLDAEDVFDDEDLVPPLSPTGSGSTKSDEDEGDEDEEEECTVDDDDDVDDDDDVDDDLQSVSSTEGSNHSLLSEALSGAGEASTEEAASSWSSAVSEDHTSPDSCATSNSRPGSTVDHRRDRHSRPPSYATAGAAAVAAVTAAANATDTNPYACQYCDKTFPRGSYLKKHEQTHGESMPFKCQFCRRLFKHKRSRDRHVKLHTGDKKYKCTQCDHAFSRSDHLKIHMKTHDNQKPFQCTVCNRGYSTAAALTSHMQNHHKRAAERANSPQISGPSYKCLQCTQIFRKPDELQNHTATHHLGEQLSSNSRSSKRSTPPKTPNQYICMYCTKEVSSMDALQQHFQTKHSAIVNGKQQEDIFSAVPPAAAFPWLNFADSPALALPPYSCRLCMSQFPSVTSLQKHFTTAHYLNSVLNNNIPNNNNNNSNNNNNTNGCKSGGGGLVPMFNWPAMSGANGYHHHRHSTPAGGGGFLLEETVQTGPTDLSLSSSKHGGGKHHHTSSGKHKSADDQRNHATSKKSRSSPGRDLSAADQQRHIKQERVGSHNAYDSKHLQQPRPTTTRPPSQLGISNHNNNNNNNHSINNNSIHADNKIQLPCPHCHLTFALFEDYQQHVIGHFLMAAAEYSCQECSTSFATSEHVQKHLMETHAQNFYRCMLCKEVFPTKSALKVHFSMNHGSEHRMFRCNNCTGLSRPLFQTEIEFIDHLRNTHYSARSPPPVQANLMLRCLVCHATFNTQSDMEQHLASHSKQFQCQFCSEAFHIEFLLDRHIQTHHSSSILSHLNRNHRESPSSMCTSPTYISRTSDGSKHATENGTTACDICEKNDFRNELDLMAHKRTMHQVKPTNLSTKVSLHCAYCNENCKSRTDLENHMKTHSQHGSNVGKHKCNICDEIYQSAISLAEHKLTHCKVATSTVCSHCKMTIDNEDQFHHHLQKHCNPVNANGNQVAFPTSCIICRQTLVSDIEVKVHVHYHLSRLKEPPAVCGNCNRYKRSASSPCTGCNPARNSGSERCPDCGAAFDAFGALQHHLTTVHRKPFHCFKCKIGFESQQEATIHLGTHLATLNGSVDGIECGLCPCVLPTANSLQTHLIEHTFAGCKAFTCYLCSAIFTAPTGLQAHMTVDHSAETPPYDCPRPGCQAKFFFTAELDRHTLEHQGQDVLANMNFYKYQNKLMSICDKLSFKCADCYQSFLTQTDLQCHVYDHHRQQKDAPPTGPESKDVKQEMSGCVVNGNADESQLLGGCERADNPIKEEEDGNEVNVKTEHHEKDDEDEEMIDVGVNNRGEXKSGDDEEDVDMR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00136337;
90% Identity: iTF_01038682;
80% Identity: -