Basic Information

Insect: Diuraphis noxia
Gene Symbol: -
Assembly: GCA_001186385.1
Location: NW:3949-13340[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 17 0.00018 0.012 15.5 4.0 1 23 89 111 89 111 0.98

2 17 0.0006 0.041 13.8 1.2 1 20 119 138 119 139 0.95

3 17 1.4e-05 0.00094 19.0 0.3 1 23 147 169 147 169 0.99

4 17 0.00032 0.022 14.7 0.2 1 21 180 200 180 201 0.96

5 17 6.8e-06 0.00047 19.9 0.6 1 23 208 230 208 230 0.99

6 17 3.6e-05 0.0025 17.7 0.1 1 21 241 261 241 262 0.96

7 17 8.3e-07 5.7e-05 22.8 0.4 1 22 269 290 269 290 0.97

8 17 3.6e-08 2.5e-06 27.1 1.2 1 23 297 319 297 319 0.99

9 17 7.7e-08 5.3e-06 26.1 0.3 1 23 325 347 325 347 0.97

10 17 1.1e-05 0.00077 19.3 1.2 1 23 353 376 353 376 0.94

11 17 2.1e-05 0.0015 18.4 0.9 1 23 382 404 382 404 0.98

12 17 2.5e-05 0.0017 18.2 1.0 1 23 410 432 410 432 0.99

13 17 2.5e-09 1.7e-07 30.7 0.7 1 23 438 460 438 460 0.98

14 17 1.6e-07 1.1e-05 25.0 0.3 1 23 466 489 466 489 0.96

15 17 7.7e-05 0.0053 16.6 1.7 1 23 495 517 495 517 0.96

16 17 2.9e-05 0.002 18.0 0.7 3 23 525 545 523 545 0.97

17 17 1.2e-07 8.5e-06 25.4 1.1 1 23 551 573 551 573 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	17	0.00018	0.012	15.5	4.0	1	23	89	111	89	111	0.98
2	17	0.0006	0.041	13.8	1.2	1	20	119	138	119	139	0.95
3	17	1.4e-05	0.00094	19.0	0.3	1	23	147	169	147	169	0.99
4	17	0.00032	0.022	14.7	0.2	1	21	180	200	180	201	0.96
5	17	6.8e-06	0.00047	19.9	0.6	1	23	208	230	208	230	0.99
6	17	3.6e-05	0.0025	17.7	0.1	1	21	241	261	241	262	0.96
7	17	8.3e-07	5.7e-05	22.8	0.4	1	22	269	290	269	290	0.97
8	17	3.6e-08	2.5e-06	27.1	1.2	1	23	297	319	297	319	0.99
9	17	7.7e-08	5.3e-06	26.1	0.3	1	23	325	347	325	347	0.97
10	17	1.1e-05	0.00077	19.3	1.2	1	23	353	376	353	376	0.94
11	17	2.1e-05	0.0015	18.4	0.9	1	23	382	404	382	404	0.98
12	17	2.5e-05	0.0017	18.2	1.0	1	23	410	432	410	432	0.99
13	17	2.5e-09	1.7e-07	30.7	0.7	1	23	438	460	438	460	0.98
14	17	1.6e-07	1.1e-05	25.0	0.3	1	23	466	489	466	489	0.96
15	17	7.7e-05	0.0053	16.6	1.7	1	23	495	517	495	517	0.96
16	17	2.9e-05	0.002	18.0	0.7	3	23	525	545	523	545	0.97
17	17	1.2e-07	8.5e-06	25.4	1.1	1	23	551	573	551	573	0.99

Sequence Information

Coding Sequence: ATGGAACCATCAAGAACTTCTGTAAATGATTCTGAAATAAATTCCAAagataAATGCGAATTTGAAgaagaaataaatacaactaattttaaaataaaaaacaaaagggATTATATTGATGGTAATGTATTTGAAAGAACAGATTCTAGTGAAAGCCACTGTTCTGAAttcattaattgtttaaattcgTACAAGACATCTAACTTAAgggaaacattttcaaattcgtGTGATTTTCAAGTCAACAACAAATTTCAAACTATGCACAAATGCAATATATGTGATCAATTATTTTACTCGGAGACACACTTGACAAGGCATGCAAAGATTCATAcaagtaaaagaaaaaagtgttttatttgtgacatttgtaaaaaattgtgttatactAAATCAGATTTGAGAACACACATACTGTGTTGTATGAAAACAAAGCCCTATAAATGTGATATTTGTGATGAAGGGTTTTCTACAACACTACAATTAATAATCCATAAAAATACACATGCTGTTCGTACAAGTATAAGAATAAAGTGTTATTTTTGTGACATTTGTGAAGaattatactatactaaatCAGATTTGAGAACACACATACGTGGTTGTATGAGAACAAGGCCTTATAAATGTGATATCTGTGATGAAGGGTTTTCTACAACACTACAATTAAGAgtacataaaaatacacattYTGTTCATACAAGTAAAAGAAAACAGTGTTATATTTGTGACATTTGTgaagaattttattatactaaatcagATTTGAGAACACACATACGTGGTTGTATGAGAATAGAGCCCTATAAATGTGAATACTGTGGTGAAGAGTTTTCTACAAAAATGCAATTAACAATCCATCAAAATACACCTTATGAACCAAAACCATATCAATGTaatatttgtgataaaaattttgCTACATCATCATATTTAACTGTCCATACAAGATCACATACTGGTGAAAAGCCATTTATATGTGATATCTGTGGTAAAAGGTTTTCTAGATATGACAATTTGAACATCCATTTGATATCACATACTGGTGATAAGCCATTTTTATGTCATGTATGTGGTAAAGGGTTTTCTTCAGCATCAGTTTTAAATAGACACAATAAGAGAATACATAAGAGAAAAAAGCCCTATAAATGTAAAGTCTGTGATGAAGGGTTTTCtacaagattaaaattaaaaatccacaGAAGTatacatactaaaaaaaaaccttttaaatGTAGAATTTGTGGTAAAAGGGTTTCTGATTCACTAACTTTAACTATCCATAAAAGATCACATACTGGTGAAAAGCCATATGTTTGTGATACCTGTGGTAAAAGGTTTTCTAGAAATGACAATTTGCAAATCCATATGAGATTACATACTGGCAATAAGCCATATAAATGTGATGAATgtggtaaaatgtattcttcatcaacaaatttaaaactgcATATTATGGGGATACATACTGGTGAAAAGCCATTTCAATGCGATACCTGTGATAAAAAGTTTTTGAGTTCGTCAAGTTTAACAAGACATTCAAGTATCCATACAGGAATAAGGCCATGTTTATGTGAAGTTTGTGGTAAAGGGTATTCTACTAAAGCAGTTTTAAAACAACATATGGTGACACATAAAGGAGTAAAGCCATATAAATGTGACTTCTGTGATCAAAGGTTTACTCAAGCAGGAAATTTAAGAACCCATTTAAGAATACATAGTTAA
Protein Sequence: MEPSRTSVNDSEINSKDKCEFEEEINTTNFKIKNKRDYIDGNVFERTDSSESHCSEFINCLNSYKTSNLRETFSNSCDFQVNNKFQTMHKCNICDQLFYSETHLTRHAKIHTSKRKKCFICDICKKLCYTKSDLRTHILCCMKTKPYKCDICDEGFSTTLQLIIHKNTHAVRTSIRIKCYFCDICEELYYTKSDLRTHIRGCMRTRPYKCDICDEGFSTTLQLRVHKNTHXVHTSKRKQCYICDICEEFYYTKSDLRTHIRGCMRIEPYKCEYCGEEFSTKMQLTIHQNTPYEPKPYQCNICDKNFATSSYLTVHTRSHTGEKPFICDICGKRFSRYDNLNIHLISHTGDKPFLCHVCGKGFSSASVLNRHNKRIHKRKKPYKCKVCDEGFSTRLKLKIHRSIHTKKKPFKCRICGKRVSDSLTLTIHKRSHTGEKPYVCDTCGKRFSRNDNLQIHMRLHTGNKPYKCDECGKMYSSSTNLKLHIMGIHTGEKPFQCDTCDKKFLSSSSLTRHSSIHTGIRPCLCEVCGKGYSTKAVLKQHMVTHKGVKPYKCDFCDQRFTQAGNLRTHLRIHS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00463501;
90% Identity: iTF_00463501;
80% Identity: iTF_00463501;