Basic Information

Insect: Diuraphis noxia
Gene Symbol: -
Assembly: GCA_001186385.1
Location: NW:818-2867[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 17 0.00015 0.01 15.8 4.0 1 23 2 24 2 24 0.98

2 17 0.00049 0.034 14.1 1.2 1 20 32 51 32 52 0.95

3 17 1.1e-05 0.00078 19.3 0.3 1 23 60 82 60 82 0.99

4 17 0.00027 0.018 14.9 0.2 1 21 93 113 93 114 0.96

5 17 5.6e-06 0.00038 20.2 0.6 1 23 121 143 121 143 0.99

6 17 3e-05 0.0021 17.9 0.1 1 21 154 174 154 175 0.96

7 17 6.8e-07 4.7e-05 23.1 0.4 1 22 182 203 182 203 0.97

8 17 2.9e-08 2e-06 27.4 1.2 1 23 210 232 210 232 0.99

9 17 6.3e-08 4.4e-06 26.3 0.3 1 23 238 260 238 260 0.97

10 17 9.2e-06 0.00063 19.5 1.2 1 23 266 289 266 289 0.94

11 17 1.8e-05 0.0012 18.6 0.9 1 23 295 317 295 317 0.98

12 17 2e-05 0.0014 18.5 1.0 1 23 323 345 323 345 0.99

13 17 2.1e-09 1.4e-07 31.0 0.7 1 23 351 373 351 373 0.98

14 17 1.3e-07 9.2e-06 25.3 0.3 1 23 379 402 379 402 0.96

15 17 6.3e-05 0.0043 16.9 1.7 1 23 408 430 408 430 0.96

16 17 2.4e-05 0.0016 18.2 0.7 3 23 438 458 436 458 0.97

17 17 1e-07 7e-06 25.7 1.1 1 23 464 486 464 486 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	17	0.00015	0.01	15.8	4.0	1	23	2	24	2	24	0.98
2	17	0.00049	0.034	14.1	1.2	1	20	32	51	32	52	0.95
3	17	1.1e-05	0.00078	19.3	0.3	1	23	60	82	60	82	0.99
4	17	0.00027	0.018	14.9	0.2	1	21	93	113	93	114	0.96
5	17	5.6e-06	0.00038	20.2	0.6	1	23	121	143	121	143	0.99
6	17	3e-05	0.0021	17.9	0.1	1	21	154	174	154	175	0.96
7	17	6.8e-07	4.7e-05	23.1	0.4	1	22	182	203	182	203	0.97
8	17	2.9e-08	2e-06	27.4	1.2	1	23	210	232	210	232	0.99
9	17	6.3e-08	4.4e-06	26.3	0.3	1	23	238	260	238	260	0.97
10	17	9.2e-06	0.00063	19.5	1.2	1	23	266	289	266	289	0.94
11	17	1.8e-05	0.0012	18.6	0.9	1	23	295	317	295	317	0.98
12	17	2e-05	0.0014	18.5	1.0	1	23	323	345	323	345	0.99
13	17	2.1e-09	1.4e-07	31.0	0.7	1	23	351	373	351	373	0.98
14	17	1.3e-07	9.2e-06	25.3	0.3	1	23	379	402	379	402	0.96
15	17	6.3e-05	0.0043	16.9	1.7	1	23	408	430	408	430	0.96
16	17	2.4e-05	0.0016	18.2	0.7	3	23	438	458	436	458	0.97
17	17	1e-07	7e-06	25.7	1.1	1	23	464	486	464	486	0.99

Sequence Information

Coding Sequence: ATGCACAAATGCAATATATGTGATCAATTATTTTACTCGGAGACACACTTGACAAGGCATGCAAAGATTCATAcaagtaaaagaaaaaagtgttttatttgtgacatttgtaaaaaattgtgttatactAAATCAGATTTGAGAACACACATACTGTGTTGTATGAAAACAAAGCCCTATAAATGTGATATTTGTGATGAAGGGTTTTCTACAACACTACAATTAATAATCCATAAAAATACACATGCTGTTCGTACAAGTATAAGAATAAAGTGTTATTTTTGTGACATTTGTGAAGaattatactatactaaatCAGATTTGAGAACACACATACGTGGTTGTATGAGAACAAGGCCTTATAAATGTGATATCTGTGATGAAGGGTTTTCTACAACACTACAATTAAGAgtacataaaaatacacattYTGTTCATACAAGTAAAAGAAAACAGTGTTATATTTGTGACATTTGTgaagaattttattatactaaatcagATTTGAGAACACACATACGTGGTTGTATGAGAATAGAGCCCTATAAATGTGAATACTGTGGTGAAGAGTTTTCTACAAAAATGCAATTAACAATCCATCAAAATACACCTTATGAACCAAAACCATATCAATGTaatatttgtgataaaaattttgCTACATCATCATATTTAACTGTCCATACAAGATCACATACTGGTGAAAAGCCATTTATATGTGATATCTGTGGTAAAAGGTTTTCTAGATATGACAATTTGAACATCCATTTGATATCACATACTGGTGATAAGCCATTTTTATGTCATGTATGTGGTAAAGGGTTTTCTTCAGCATCAGTTTTAAATAGACACAATAAGAGAATACATAAGAGAAAAAAGCCCTATAAATGTAAAGTCTGTGATGAAGGGTTTTCtacaagattaaaattaaaaatccacaGAAGTatacatactaaaaaaaaaccttttaaatGTAGAATTTGTGGTAAAAGGGTTTCTGATTCACTAACTTTAACTATCCATAAAAGATCACATACTGGTGAAAAGCCATATGTTTGTGATACCTGTGGTAAAAGGTTTTCTAGAAATGACAATTTGCAAATCCATATGAGATTACATACTGGCAATAAGCCATATAAATGTGATGAATgtggtaaaatgtattcttcatcaacaaatttaaaactgcATATTATGGGGATACATACTGGTGAAAAGCCATTTCAATGCGATACCTGTGATAAAAAGTTTTTGAGTTCGTCAAGTTTAACAAGACATTCAAGTATCCATACAGGAATAAGGCCATGTTTATGTGAAGTTTGTGGTAAAGGGTATTCTACTAAAGCAGTTTTAAAACAACATATGGTGACACATAAAGGAGTAAAGCCATATAAATGTGACTTCTGTGATCAAAGGTTTACTCAAGCAGGAAATTTAAGAACCCATTTAAGAATACATAGTTAA
Protein Sequence: MHKCNICDQLFYSETHLTRHAKIHTSKRKKCFICDICKKLCYTKSDLRTHILCCMKTKPYKCDICDEGFSTTLQLIIHKNTHAVRTSIRIKCYFCDICEELYYTKSDLRTHIRGCMRTRPYKCDICDEGFSTTLQLRVHKNTHXVHTSKRKQCYICDICEEFYYTKSDLRTHIRGCMRIEPYKCEYCGEEFSTKMQLTIHQNTPYEPKPYQCNICDKNFATSSYLTVHTRSHTGEKPFICDICGKRFSRYDNLNIHLISHTGDKPFLCHVCGKGFSSASVLNRHNKRIHKRKKPYKCKVCDEGFSTRLKLKIHRSIHTKKKPFKCRICGKRVSDSLTLTIHKRSHTGEKPYVCDTCGKRFSRNDNLQIHMRLHTGNKPYKCDECGKMYSSSTNLKLHIMGIHTGEKPFQCDTCDKKFLSSSSLTRHSSIHTGIRPCLCEVCGKGYSTKAVLKQHMVTHKGVKPYKCDFCDQRFTQAGNLRTHLRIHS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00463502;
90% Identity: iTF_00463502;
80% Identity: iTF_00463502;