Dang010538.1
Basic Information
- Insect
- Ditula angustiorana
- Gene Symbol
- Rfx2
- Assembly
- GCA_963691745.1
- Location
- OY829477.1:14779389-14799899[+]
Transcription Factor Domain
- TF Family
- RFX
- Domain
- RFX domain
- PFAM
- PF02257
- TF Group
- Basic Domians group
- Description
- RFX is a regulatory factor which binds to the X box of MHC class II genes and is essential for their expression. The DNA-binding domain of RFX is the central domain of the protein and binds ssDNA as either a monomer or homodimer [1]. It recognize X-boxes (DNA of the sequence 5'-GTNRCC(0-3N)RGYAAC-3', where N is any nucleotide, R is a purine and Y is a pyrimidine) using a highly conserved 76-residue DNA-binding domain (DBD) [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 8 0.069 1e+03 1.1 0.0 3 17 193 207 192 212 0.86 2 8 0.069 1e+03 1.1 0.0 3 17 248 262 247 267 0.86 3 8 0.069 1e+03 1.1 0.0 3 17 303 317 302 322 0.86 4 8 0.069 1e+03 1.1 0.0 3 17 358 372 357 377 0.86 5 8 0.069 1e+03 1.1 0.0 3 17 413 427 412 432 0.86 6 8 0.069 1e+03 1.1 0.0 3 17 468 482 467 487 0.86 7 8 0.069 1e+03 1.1 0.0 3 17 523 537 522 542 0.86 8 8 3.3e-37 4.9e-33 114.3 0.0 3 78 578 653 576 654 0.97
Sequence Information
- Coding Sequence
- atgactgAGATGGGCTTCGAGAACGTGTTTTACCTTGAGAACTTTGAGTGCTGTGGCGACGAAGTGCTAGTGGAGTCGTCGCCGCCGGCTTCGCCTGACATGGCGGCGCGGCTCGCCCAGCCCGCGCAGGgagcgggtgcgggcggcgcgtcgCCGGGCGCCGTGCGGGAGCTCATCGTCATCCCGGAGATCTCCAACACCATCAACCTGCAGCACGCCATACAGCAGGTCTCCAGCACGGTCGTCGAGGTGAACGGAGACAGCTCCGGCCACTCCAGCCCCACCGCCGAGGCGCAGCATACTTACATCACTGTGGCGAGCGAGGGCAGCAATGGCGTCAACTATCACGTGCAGTACGTGGAGCCCCAGGAGATCTACACCCAGGGCCACGAGACCCATATGGAGAGCCTCCGCTCGTACCCGGTGTACGGCGTGGCGACGGTCAACGCGGCCGAGCCGCCGGCGGAGGCCTGGAGCGCCGACGAGTTCTCGTACAACGTGGTGGTCGGCGCCGACGACGCGCCcgcctcgcccgcgcccgcgcccgccacgccgccgcagccgcgcatGCCGCCCGCCACCGTGCAGTGGCTGCTGGACAACTACGAGACTGCCGACGGTTATGGCTGCTGGACAACTACGAGACTGCCGACGGTTAGTGGCTCGCTGACACGCTGTGTCCTCGCACCGCGTGCTGCTgggcccgcgcccgccacgccgccgcagccgcgcatGCCGCCCGCCACCGTGCAGTGGCTGCTGGACAACTACGAGACTGCCGACGGTTATGGCTGCTGGACAACTACGAGACTGCCGACGGTTAGTGGCTCGCTGACACGCTGTGTCCTCGCACCGCGTGCTGCTgggcccgcgcccgccacgccgccgcagccgcgcatGCCGCCCGCCACCGTGCAGTGGCTGCTGGACAACTACGAGACTGCCGACGGTTATGGCTGCTGGACAACTACGAGACTGCCGACGGTTAGTGGCTCGCTGACACGCTGTGTCCTCGCACCGCGTGCTGCTgggcccgcgcccgccacgccgccgcagccgcgcatGCCGCCCGCCACCGTGCAGTGGCTGCTGGACAACTACGAGACTGCCGACGGTTATGGCTGCTGGACAACTACGAGACTGCCGACGGTTAGTGGCTCGCTGACACGCTGTGTCCTCGCACCGCGTGCTGCTgggcccgcgcccgccacgccgccgcagccgcgcatGCCGCCCGCCACCGTGCAGTGGCTGCTGGACAACTACGAGACTGCCGACGGTTATGGCTGCTGGACAACTACGAGACTGCCGACGGTTAGTGGCTCGCTGACACGCTGTGTCCTCGCACCGCGTGCTGCTgggcccgcgcccgccacgccgccgcagccgcgcatGCCGCCCGCCACCGTGCAGTGGCTGCTGGACAACTACGAGACTGCCGACGGTTATGGCTGCTGGACAACTACGAGACTGCCGACGGTTAGTGGCTCGCTGACACGCTGTGTCCTCGCACCGCGTGCTGCTgggcccgcgcccgccacgccgccgcagccgcgcatGCCGCCCGCCACCGTGCAGTGGCTGCTGGACAACTACGAGACTGCCGACGGTTATGGCTGCTGGACAACTACGAGACTGCCGACGGTTAGTGGCTCGCTGACACGCTGTGTCCTCGCACCGCGTGCTGCTgggcccgcgcccgccacgccgccgcagccgcgcatGCCGCCCGCCACCGTGCAGTGGCTGCTGGACAACTACGAGACTGCCGACGGCGTGTCGCTGCCGCGCTCCACACTGTACGCGCACTACCTGCGGCACTGCGCGGCGCACCGCCTGGACCCGGTCAACGCGGCGTCGTTCGGCAAGCTGATCCGCTCCGTGTTCGTCggcctgcgcacgcgccgcctcggcacgcgcggcaactccaAGTACCACTACTACGGGATCCGCGCCAAGGCCGCGCAGCCTGATCCTGCGCCGGAGCACGCCGATGACAAGACGGACGTGCAACATGATGATATGCAGGAGCCGCGCGACCGCGACTCGGAGCCGGCGACGCCGGGTGGCGGCGTGCCCGGCCTGGCCCACCGGCAGTACCTCGGCACAGGTAATAGGCGTGACGACTAA
- Protein Sequence
- MTEMGFENVFYLENFECCGDEVLVESSPPASPDMAARLAQPAQGAGAGGASPGAVRELIVIPEISNTINLQHAIQQVSSTVVEVNGDSSGHSSPTAEAQHTYITVASEGSNGVNYHVQYVEPQEIYTQGHETHMESLRSYPVYGVATVNAAEPPAEAWSADEFSYNVVVGADDAPASPAPAPATPPQPRMPPATVQWLLDNYETADGYGCWTTTRLPTVSGSLTRCVLAPRAAGPAPATPPQPRMPPATVQWLLDNYETADGYGCWTTTRLPTVSGSLTRCVLAPRAAGPAPATPPQPRMPPATVQWLLDNYETADGYGCWTTTRLPTVSGSLTRCVLAPRAAGPAPATPPQPRMPPATVQWLLDNYETADGYGCWTTTRLPTVSGSLTRCVLAPRAAGPAPATPPQPRMPPATVQWLLDNYETADGYGCWTTTRLPTVSGSLTRCVLAPRAAGPAPATPPQPRMPPATVQWLLDNYETADGYGCWTTTRLPTVSGSLTRCVLAPRAAGPAPATPPQPRMPPATVQWLLDNYETADGYGCWTTTRLPTVSGSLTRCVLAPRAAGPAPATPPQPRMPPATVQWLLDNYETADGVSLPRSTLYAHYLRHCAAHRLDPVNAASFGKLIRSVFVGLRTRRLGTRGNSKYHYYGIRAKAAQPDPAPEHADDKTDVQHDDMQEPRDRDSEPATPGGGVPGLAHRQYLGTGNRRDD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -