Basic Information

Insect: Dircenna loreta
Gene Symbol: -
Assembly: GCA_963555665.1
Location: OY743096.1:16339144-16344404[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 6.4 5.5e+02 2.0 0.1 3 23 104 124 102 124 0.93

2 18 0.088 7.6 7.9 0.1 2 23 128 150 127 150 0.95

3 18 0.00057 0.049 14.7 0.9 2 23 375 397 374 397 0.96

4 18 8 6.9e+02 1.7 0.7 1 20 405 424 405 426 0.93

5 18 0.017 1.5 10.1 0.4 2 23 436 457 435 457 0.94

6 18 0.95 82 4.6 0.4 1 23 473 496 473 496 0.85

7 18 0.091 7.9 7.8 1.6 1 23 505 528 505 528 0.92

8 18 9.6 8.3e+02 1.4 0.3 8 23 578 594 569 594 0.89

9 18 0.11 9.2 7.6 1.9 3 23 606 627 605 627 0.92

10 18 3.3e-05 0.0028 18.6 1.9 1 23 661 683 661 683 0.97

11 18 2.4e-06 0.00021 22.2 1.3 1 23 690 712 690 712 0.98

12 18 8.4e-05 0.0073 17.4 2.3 1 23 717 739 717 739 0.96

13 18 0.0023 0.2 12.8 1.7 1 23 745 767 745 767 0.99

14 18 1.7e-06 0.00015 22.7 1.4 1 23 773 795 773 795 0.98

15 18 9.7e-05 0.0084 17.2 2.2 2 23 802 823 802 823 0.97

16 18 0.00055 0.048 14.8 0.3 2 23 831 853 830 853 0.97

17 18 0.0018 0.15 13.2 1.0 1 23 858 880 858 880 0.98

18 18 0.0032 0.28 12.4 3.3 1 23 886 909 886 909 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	6.4	5.5e+02	2.0	0.1	3	23	104	124	102	124	0.93
2	18	0.088	7.6	7.9	0.1	2	23	128	150	127	150	0.95
3	18	0.00057	0.049	14.7	0.9	2	23	375	397	374	397	0.96
4	18	8	6.9e+02	1.7	0.7	1	20	405	424	405	426	0.93
5	18	0.017	1.5	10.1	0.4	2	23	436	457	435	457	0.94
6	18	0.95	82	4.6	0.4	1	23	473	496	473	496	0.85
7	18	0.091	7.9	7.8	1.6	1	23	505	528	505	528	0.92
8	18	9.6	8.3e+02	1.4	0.3	8	23	578	594	569	594	0.89
9	18	0.11	9.2	7.6	1.9	3	23	606	627	605	627	0.92
10	18	3.3e-05	0.0028	18.6	1.9	1	23	661	683	661	683	0.97
11	18	2.4e-06	0.00021	22.2	1.3	1	23	690	712	690	712	0.98
12	18	8.4e-05	0.0073	17.4	2.3	1	23	717	739	717	739	0.96
13	18	0.0023	0.2	12.8	1.7	1	23	745	767	745	767	0.99
14	18	1.7e-06	0.00015	22.7	1.4	1	23	773	795	773	795	0.98
15	18	9.7e-05	0.0084	17.2	2.2	2	23	802	823	802	823	0.97
16	18	0.00055	0.048	14.8	0.3	2	23	831	853	830	853	0.97
17	18	0.0018	0.15	13.2	1.0	1	23	858	880	858	880	0.98
18	18	0.0032	0.28	12.4	3.3	1	23	886	909	886	909	0.98

Sequence Information

Coding Sequence: atgtcGTCCGACGAATCAGATGACGAACCGCTAGCTCTTTTAGCGGcatctaagaaaataaatatcgaagTTGAATTCGCAAATAAGGAAGATGAGGCACCACctcctaaaaaaaataggtttgtGAACAAAATTGATCGTAAACTGAATGTCGCTGCACCACTGGTTATTGAAAGGCCTGCTGATGTTTGGTTGTATCTAAAAGACTTAAAATCTTCGGGCCCTTATAGCTGCTTATTGTGTGAAGATTGGTTTATAAATCGCTCAAAAATGATACTTCATTATGCAGTAAACCACAAGAAAGATTTTTGTGGTATATGCAGATATTTTGTACCAAATAGAGAAGCATGGCTGGCTCatgaaaattttcatttacctTGGCCATGTTCTCAATGTATAGAAACTTTCTCATCTGAACTAATGTTAAGACAACATCTCAATTCAGTCCACAACCTAGTCCACTGTAGATTGTGCCACTTCAGAGTGTCAGCTGATTACCATTATAACTCTCATTTATTTGAGAAGCACAGTGTTAGTAATGTATCTTCTAAAAATGAGGATGTACTTTGGAAAGAAGAAGAAGGTGATAAATTCCAGTGTTTGCTTTGCTTAAAGTCTGATAACATGATATCTACATTCTTTAGTCATTACATGGGCATACaccatttaactttaaaatgtttgacaaCTATTATTGCTGGTAAAGACACACCCTTTACAGTGAAAGGAGCAGAAGTTAGcgagaaatttataaatgagcAACTTAAAGGTCATTTAAGGTTGGGCTATGTGGATTGGGAACCAAAAGTGGATGGGAAAGATGACATGGATAATACAATTGATACCAAAATTTGTCCTATACCAGAAATTAAAGAAGAAATCATCAGTGATGTGGAAGAACAGGtggaaaaagaaaacaaaacaaaaaaaaagcctgattataaaaatgatgagTATAAGGGTGAAGATGATTTTGACATCACATATATGGAATTGATAATAGTTGATCAatcttattttgaatatgttgATAAATCtcttaatgatataaattcaaatattatgcctgaaaaatcatatttaaattatgaaaaaatgaaATCAGAAATTTACATGGATGTGGAGTGttctttttgtaaaacaacttttaataCAGCTCAATCATTTATGGaacatatgaataaaatacatagtGTCAAATCTATACCTCTTTACTCTTGTCGAGTTTGTTGTGCTACATTTGACAATTACCTTGATTTAACAAGTCATGTTAGTGAGGAATTAGCAGATTTTGAAGACTTGTGGATTTGTCAATTTTGTGACAAGGAGTTTGATAACCGAGAGGCTACAAGACAACACTTAACAGAGCATTGGGGAGCATTGGATTATGACAACTGTTTTAGCCCACATTTAGGTTTCAAATGCAAGTATTGTCCAACATTATTCTGGAATGAACCAGACAGAGAGACACatcaaataaaagtacattttgataaatataaacatcagttttataaatgtgataaATGTGAAATGAAATTTGGTGATAAGGTGTGGTATGTTTATCATCATTTAGCAAAGCACCAACCTCAGAATACCaaaacaaactatattttaaagtgttgCCTTTGTTGCTCAGTGATGTCTAATATTGAGGATATGAGGAGTCACTTTGCTGTTAAGCATgcggaatttaaaaaagtatattgtaatttagaaCCTTGCATGTACAAATCATTAAATCATctgaaatctttaaaaattcaCACTAAGATGGTTCACACTCCATCCCAAATCCCGAAGAAACAGGTGGCCTGTAACATCTGCAACCGCAAGTTCAATAACGCCCGTGCCTGCAGCACTCACATGTCTCAGGTGCACGGCCCCGGCAAGTTCAAATGTAAACTGTGTAGAGATGTGCTGCACACTCCCGATGAGAGGAAGCTGCACTATCTTCTATGTCATCCCGGACGACATCCGTTCGAGTGCACGGAGTGTGGCAAGTCCTTCCAGTACAAGTCCTCCCTGTACATGCACAAACAGGAACACATGCCCAATAAGCAGAGTTATACGTGTACATACTGCAATAAAGTGTTTGCGAAAAAGGATTCGTACCGCGAGCACATCCAGATCCACGAGGGTCCCCGGCACGCGTGCTCGTACTGCCCCATGCGCTTCGTGCAGCGCTCCAACATGCTGCGCCACGAGCGCCGCCACACCGGGGAGCGCCCCTACCGCTGCCCGCACTGCGCTCGGGCCTTCGCCGACAAGGGCGCCTGCACCTCGCACGCGCGaaCTCATTCGAAAGAATCATCTTACGCATGTCTTTATTGCGGGCAAACATTTGTCCAGAAGTCGAAGCTTACTTATCATATACGGAAACATACAGGAGAAaATTTGGAGTCTTGTCCCGTGTGTTCAAAACTGTTTACTAGCGCGTGTTCTTTGCGAGAACATATGAAAACACATGTGGAAAAAAAGCAGATTGTCAAATGTCCTCTGTGCGatAAGGGCTACCAGGACGAGCGCTACATGCTGCGGCACCTTCGCACGCTGCACTCGCGGGCGCAGTTCTCGTGTCCGCTGTGCCACAAGCTGCTGTCCAGCGCTGCAGGGCTTCGGCACCACGTCATCACGCACAGCTGCGTCAACACCTTCCAGTGTAAATCCTGCACAAAGTCCTATGCAGTGAAAAGAACAATGCTGAAACACTTACGAAAGCGCCACGGCTTGACCGGCAATGAACTGAACATAAAGGACTACTTTACGAGGCTCGAGCCACGAGACTGTCAGCTGAATCTCGACGAAACTACAATGACCAGTATATTTGGACCCCCCAAGAAGAAAATGACTGACATTCTGATTGGGGACTTCGTAACATTGGCGAAGAATGTAAATGTGCCTGAGGAACGGAAAGAGACAGAAGATACAGATGATACAGAGGCGAGAGAGACAGACAGCAATGATGAGGAACCAATAGCGAATATTAAGCAAGAAGTTCATACACAGAGCAGTGATGACGAAATAGAGCCGACGGATTTTGTAAGTGTTAAGATTGAAACTATGGATGACGATTATACagagtga
Protein Sequence: MSSDESDDEPLALLAASKKINIEVEFANKEDEAPPPKKNRFVNKIDRKLNVAAPLVIERPADVWLYLKDLKSSGPYSCLLCEDWFINRSKMILHYAVNHKKDFCGICRYFVPNREAWLAHENFHLPWPCSQCIETFSSELMLRQHLNSVHNLVHCRLCHFRVSADYHYNSHLFEKHSVSNVSSKNEDVLWKEEEGDKFQCLLCLKSDNMISTFFSHYMGIHHLTLKCLTTIIAGKDTPFTVKGAEVSEKFINEQLKGHLRLGYVDWEPKVDGKDDMDNTIDTKICPIPEIKEEIISDVEEQVEKENKTKKKPDYKNDEYKGEDDFDITYMELIIVDQSYFEYVDKSLNDINSNIMPEKSYLNYEKMKSEIYMDVECSFCKTTFNTAQSFMEHMNKIHSVKSIPLYSCRVCCATFDNYLDLTSHVSEELADFEDLWICQFCDKEFDNREATRQHLTEHWGALDYDNCFSPHLGFKCKYCPTLFWNEPDRETHQIKVHFDKYKHQFYKCDKCEMKFGDKVWYVYHHLAKHQPQNTKTNYILKCCLCCSVMSNIEDMRSHFAVKHAEFKKVYCNLEPCMYKSLNHLKSLKIHTKMVHTPSQIPKKQVACNICNRKFNNARACSTHMSQVHGPGKFKCKLCRDVLHTPDERKLHYLLCHPGRHPFECTECGKSFQYKSSLYMHKQEHMPNKQSYTCTYCNKVFAKKDSYREHIQIHEGPRHACSYCPMRFVQRSNMLRHERRHTGERPYRCPHCARAFADKGACTSHARTHSKESSYACLYCGQTFVQKSKLTYHIRKHTGENLESCPVCSKLFTSACSLREHMKTHVEKKQIVKCPLCDKGYQDERYMLRHLRTLHSRAQFSCPLCHKLLSSAAGLRHHVITHSCVNTFQCKSCTKSYAVKRTMLKHLRKRHGLTGNELNIKDYFTRLEPRDCQLNLDETTMTSIFGPPKKKMTDILIGDFVTLAKNVNVPEERKETEDTDDTEARETDSNDEEPIANIKQEVHTQSSDDEIEPTDFVSVKIETMDDDYTE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01033972;
90% Identity: iTF_01034879;
80% Identity: -