Dlor008501.1
Basic Information
- Insect
- Dircenna loreta
- Gene Symbol
- ZNF296_1
- Assembly
- GCA_963555665.1
- Location
- OY743091.1:3635362-3642693[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 1.3 1.1e+02 4.2 0.3 3 20 124 141 122 144 0.87 2 14 0.013 1.1 10.4 2.5 1 23 261 283 261 283 0.99 3 14 0.00024 0.021 15.9 0.5 1 23 289 312 289 312 0.96 4 14 0.1 8.8 7.7 6.3 1 23 317 340 317 340 0.93 5 14 2e-05 0.0017 19.3 0.6 2 23 470 491 469 491 0.97 6 14 5.9e-05 0.0051 17.8 2.1 1 23 497 519 497 519 0.99 7 14 0.25 21 6.4 4.9 1 23 585 607 585 607 0.96 8 14 0.16 14 7.0 1.9 1 23 648 670 648 670 0.96 9 14 0.0081 0.7 11.1 0.9 1 23 676 698 676 698 0.98 10 14 0.0068 0.59 11.3 3.2 1 23 707 729 707 729 0.98 11 14 0.00047 0.041 15.0 0.8 2 23 774 795 774 795 0.97 12 14 0.058 5 8.4 5.3 1 23 812 834 812 834 0.95 13 14 2.4e-06 0.00021 22.2 0.7 1 23 840 862 840 862 0.98 14 14 5.1e-07 4.4e-05 24.3 3.1 1 23 868 891 868 891 0.98
Sequence Information
- Coding Sequence
- ATGAACGAAGATATGACAACGGACGTGGATCCGTTGAGTACGTATTGCTTAAGCTATCCGCCTCTTGACAATTATACACAGTTACCTCTAGATTATCAAAACCCTGTTAAACaggaaaactttttgaattacAACTTTTATACTGCCCCTATAGAGCAAGCAATAACTGTAAATAATGATCTCAATCTAGTTGATAATACTAGTGATAAACAACCGAATGTGGCTAGTAATATTGAACCAAATATCACTAACAACACACCACTAGTAGATTTCAATCCATGTTTGCCGACAAGAAGAAGGAAAATAAAGAAGGAGAAGAGTGCTTATTTTTCTGAGAAAATTATGGACAAAGACTTTCCATTCTACGGTTGTGCAGcttgtaatatatgttttaaaactctACAAGAGTTAGACTCACATGTGCCTATTCACAAAGATAGAATTACTAGTTatgatttaagaataaaaaatcagaTTAAGAAGCGGAAATTACAGAAAgagttaaaaaagaataaaaaagcaaaaaagaatattaaacagGAGATGtctattgaaattgaaattaaaccgGAGGAAGGGTACATTGGTAACGAAAAAGCATCAGACATTATTAGTACAGAATCGGACAACCAGAGTTTGAAAGAAAACAATGGTAATGGGGAATGTAGCAATAGTAAAATTGAcagtaataaagataaagattcTGATAAAATGAACAAAACTGATAGTTCAGGAGATGTTACCACCAAAAAGCAGGAGAGAATGAACTTACAGAAgatatacaaatgttttgcatgtcaaaaacaatttatgctaagttattatttgaagCTACATGTGCGGTCACATACGGACGAGAAGCCCTACACCTGCGCCCAGTGTGGTCAGGCCTTTATAACCGCCAGCAAGCTAGGCCGCCACAACAAGAGGTACCACCTCGCGATACGACACCAGTGCAGGATTTGCTATCGTTTCTTTTCTAGattcGAGTTCCTCACCCGACACTTCGACAAAAAACATCCGGACGACAAATTGGAAGGAGAACCGTATGATTACAACGCAATACTGccgtatttaaaagaattggaAGCTGAGTTAAAAGAGAAGGCAGAGTCTGAGaaagcaaaaacaaaaattgaagAACTATGGACAGACGACCTCCCCATAGACAAGAAAGAGTATATCAAAGAGGAGATGCCCATAGAGGAGGTGAAGGTGCACATGGACGTGGAGATTAAATTCGAGGCCGAGGAGGAGGAAATCAAGGAGGAGGGAGGGCGGAGTGACGGGGAGGAGAGAGTTAGTGACGTCGAGCCCGATAAAGAGGAAGTTAAGGATGAGAACTCGGACTCCGACTACTTCCCATCATCAACGTGGGCGGCGCCCCCAGTCGAAGCCCCCGGGCTCCGGTGTGAGGCGTGTGGCAAGACCGTCAGCTCGAGGAGCTACATGCGGATACACATGCGGACACACACCGGGGAGAGACCATACAAGTGCTACATCTGCGGAACCGGCTTCATCACCAGCAGCAAGATGCATCGACACGTGCTGACACATCCAGAGAGCTGGGACGaaGATGGAGTGAAGCAAGAGAATAAAAGTAAAGGAGGGAAAGAGATAAAATCAGAGACAGAGAGAGACGACGCGGACGACGTTAATGATAAGAAAAAagtGAAGATGAAAGCAGGTCTAGCGAAATTTGCAAAGAAACCAAGAAATAAAGAACAGAAGAGAGTATACCAGAAGAGACCTCATGCCTGTGAGTTCTGCCAGAAGAGATTCCTCCACCTGGAGACATTGCAAGTGCACAAAAAGTCCCATTCTGGCGAGGAGGTCGTCCACGCGTGTCACTACTGCCTGCTGGAGCTCCCGGACGCGGAGGCGCGCGCGGAGCACGAGCGGGGACACGCGGGGGGGGAGGGGGAGGCGGGGGCGAGGCCCTACCTGTGCACTCTGTGCGGGAACACCTATCAGAAGAGAGAGAGTATGATGTACCACCGCAAGAGCCACACGCAGCCGAAGTCGTTCCGCTGCGGGTCGTGCCCGGCGTCGTTCTCGGCGGCGTGCAAGCTGTCCCGCCACGCGCGCTCGCACGCGCCCGCCGCCTACTCGCTGCGCTACGAGTGCCCCGTGTGCGCGCACGTCTTCAACACGCACTACCACGCGCGCATGCACCTCGCCACGCACCAGCGGGAGGGGCTaatacaagaaaataacaGAAACGAAATACTGGCGATGGTGCTTCAGAACGCCCGGAAGATCCCCAAGACTCCGAACGCGGCGGCGTCGGACCTCATCCCCCCGGACGAGAGGAGCCGCGTGTGCAACATATGCGGGGAGGTGTTCCAGCATTTCTACTTCCTGGAGGAACACCTCAAAAGCCACGGAACCAAAATAGCGATAGAGGACAGCGAAAAGGAAGAAGAGAAGAAGCATATATGTTCCGTTTGCAATAAAGGCTTCAAATTACACTATTATCTTAAACTACACAGTTTCACGCACACGAAGGAGAAGCCGTTCATTTGTCAGCAGTGTGGTAAGGGCTTTATAACTAGGGGCAAATTGAAACGACATCTGGAAACGCACACGGGCTTGAAGAAATATCAGTGTCATATTTGCTACAAATTCTTTACTAGACCGAGTTATTTAAGAATTCACGTGAGGACCATCCACGGGACACAGGATTACAATTTTAGACTCGAAAAACAGTACGGGTTGAGTTCGTTACCTGTTATGGGAAAtgagaatttataa
- Protein Sequence
- MNEDMTTDVDPLSTYCLSYPPLDNYTQLPLDYQNPVKQENFLNYNFYTAPIEQAITVNNDLNLVDNTSDKQPNVASNIEPNITNNTPLVDFNPCLPTRRRKIKKEKSAYFSEKIMDKDFPFYGCAACNICFKTLQELDSHVPIHKDRITSYDLRIKNQIKKRKLQKELKKNKKAKKNIKQEMSIEIEIKPEEGYIGNEKASDIISTESDNQSLKENNGNGECSNSKIDSNKDKDSDKMNKTDSSGDVTTKKQERMNLQKIYKCFACQKQFMLSYYLKLHVRSHTDEKPYTCAQCGQAFITASKLGRHNKRYHLAIRHQCRICYRFFSRFEFLTRHFDKKHPDDKLEGEPYDYNAILPYLKELEAELKEKAESEKAKTKIEELWTDDLPIDKKEYIKEEMPIEEVKVHMDVEIKFEAEEEEIKEEGGRSDGEERVSDVEPDKEEVKDENSDSDYFPSSTWAAPPVEAPGLRCEACGKTVSSRSYMRIHMRTHTGERPYKCYICGTGFITSSKMHRHVLTHPESWDEDGVKQENKSKGGKEIKSETERDDADDVNDKKKVKMKAGLAKFAKKPRNKEQKRVYQKRPHACEFCQKRFLHLETLQVHKKSHSGEEVVHACHYCLLELPDAEARAEHERGHAGGEGEAGARPYLCTLCGNTYQKRESMMYHRKSHTQPKSFRCGSCPASFSAACKLSRHARSHAPAAYSLRYECPVCAHVFNTHYHARMHLATHQREGLIQENNRNEILAMVLQNARKIPKTPNAAASDLIPPDERSRVCNICGEVFQHFYFLEEHLKSHGTKIAIEDSEKEEEKKHICSVCNKGFKLHYYLKLHSFTHTKEKPFICQQCGKGFITRGKLKRHLETHTGLKKYQCHICYKFFTRPSYLRIHVRTIHGTQDYNFRLEKQYGLSSLPVMGNENL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01034873; iTF_01033968; iTF_00959616; iTF_00960373;
- 90% Identity
- iTF_01034873; iTF_01033968; iTF_00959616; iTF_00960373;
- 80% Identity
- -