Basic Information

Insect: Dircenna loreta
Gene Symbol: ham
Assembly: GCA_963555665.1
Location: OY743100.1:9066397-9082666[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.088 7.6 7.9 0.0 2 23 104 126 104 126 0.93

2 9 0.00049 0.042 15.0 1.5 1 23 133 156 133 156 0.93

3 9 1.6e-08 1.4e-06 29.1 0.1 1 23 162 185 162 185 0.96

4 9 1.4e-06 0.00012 23.0 1.7 1 23 191 213 191 213 0.95

5 9 3.4e-05 0.003 18.6 5.0 1 23 219 241 219 241 0.99

6 9 0.0012 0.11 13.7 0.8 3 21 250 268 250 269 0.96

7 9 1.2e-08 1e-06 29.5 0.7 1 23 672 694 672 694 0.98

8 9 4.2e-07 3.6e-05 24.6 1.7 1 23 700 723 700 723 0.97

9 9 3.1e-05 0.0027 18.7 4.4 1 23 729 751 729 751 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.088	7.6	7.9	0.0	2	23	104	126	104	126	0.93
2	9	0.00049	0.042	15.0	1.5	1	23	133	156	133	156	0.93
3	9	1.6e-08	1.4e-06	29.1	0.1	1	23	162	185	162	185	0.96
4	9	1.4e-06	0.00012	23.0	1.7	1	23	191	213	191	213	0.95
5	9	3.4e-05	0.003	18.6	5.0	1	23	219	241	219	241	0.99
6	9	0.0012	0.11	13.7	0.8	3	21	250	268	250	269	0.96
7	9	1.2e-08	1e-06	29.5	0.7	1	23	672	694	672	694	0.98
8	9	4.2e-07	3.6e-05	24.6	1.7	1	23	700	723	700	723	0.97
9	9	3.1e-05	0.0027	18.7	4.4	1	23	729	751	729	751	0.98

Sequence Information

Coding Sequence: ATGAGATCTACCGCAGCCTTTGGAAAGAATGGAGTCAGGTCTTGGCTGGATGGAACAACAGAGAAGTCCAACTGGTTCAAGCTCGTTCGCTGCACCACCTCGCCTGATGAAGCGAACCTACAACACGAGAAGTTTGCAGGACAAatttGGTACAAGTTAACACGTGAAGTCAGCTCGGGGCAGGAGTTACTGGTGGGTCCCTGGACGTCGCTGCCGCTACAGGACACTCTATCTGCTACTGgtAGGGAAAGTTCAGCCAGCCTCCCTCATCCCCAGCAAGAGGAAGAAGATAGAGAGGACACCAAGCCGCGCTGTTTCTTCTGTGAAGAGCCTTTTCCTAACATAGATGCACTTGACCGTCACCTGATCCAAGCGCACGCACAACCAGCGTCAGCGTATCACTGCGAGTACTGCAACAGAGCTTATAGCTATCGTGCGCTCCTGTTGAGGCATCGAGCATTAAGCCATACCGATATTAAGAAATACCCCTGCGAGAATTGCCCCAAGGTATTTACCGATCCTTCCAACCTTCAGCGCCACATCCGCGCTCAGCACGTCGGCGCTCGCAGCCACGCTTGCCCCGAGTGCGGTAAAACCTTCGCCACCAGCTCGGGACTCAAACAGCACACGCATATTCACTCCAGCGTCAAGCCTTTCCAGTGCGAAGTTTGTTTCAagGCATACACCCAGTTTTCGAATTTGTGTCGACACAAACGAATGCACATTGCTTGCAAAACATTGTCTGGGTGTAGGAAATGCGGACAATCATTTTCTTCTTACGCGTCTCTTGCTAAGCACAAGAGATTTTGTGAAACTGCTACCACTCCAAGCGTTAATCTTCGAGGTCAAATAGGACAGAGCTTACAACAGATACCACCGTTACCAAACACCATGAATAATCCAAATAATACGAATCCATTCCCGATGTATAGGGGACCAGCGCTTCCTTTACCATACAATACGTTCGCACATTACCCAGCTTTTATTTCTGCAGCTGCGGCTGCTGCTTGCCCACCAGATTTTTTAAGCCCTCTTCTTTTCAATGTACAAGGCGCAAGATTGGCTATGGAACATGACCTGGCACTTAATGCCAGTTTAATTGCAAAACAACAACAGGAAGAAAGAAAGTCAGTTAAGAGAGAGACAGAGAGCATAGATAGTTCTACTTCTGTAGATTTATTGCATAAGGGAAAGGACATAGTTTGTGATGACAAAGATATGGATGTAGATAGAGTTACACCCAAACCTCAGAATCATTACGTTAAACAATCACCACCGTCAGCTGAAGAGGCTACGTCAAAACAACGTCCATCGCCAGTAATGCCAATGTCAACTACAGTAGGTCCTTTCGATTTTTCAAGAAACGAAATAAAACACAACTCGTTATATGACTTTCCgatgaaagtaaataataacgaaaaattagaaaataagtcAGTTTCACCGCAGCCTAAAGATTTGACGAAGAACATTACTGATGATATTGAAAAACGATCTAGATATTCTAACATGGAGCAagataaaacaacaaaagaaCAAAATGACCAGCCACTTGACTTATCCGTTTCTCGAAAACCACGTGATAAGGAATCAGACGTAGAGAATGATGATAATTCCTTTCGTAATTTATCAGTCAAATCTTACTCACCTGCTGAAAGTCCAATTGATAGAGAAAACAAAACTCCTGAAAACGAGACCACAGATGTTGATGTTGAAGCTGTTGAACCAAAACGGGAGGACTCTCCAGTTTCGATGATATCTCCTCCTTTAGCATTTCCGATGGCCGTCCATGCTCAACACAATAACAGTCTTATGAACGCAATGTACCCGCCACGTTTTTCAAGATTTCACTCCCCTTCAGATTCTTTACTTAACTCACAGCACTCACCCTACGTTCCGAGCCCGTTCAATTTTTTATCACCACTCTTGGGCACTGATGGTCCAGAAAGACAGTCAAGTGCATATGCCAAATTTCGTGAACTGAGTGCTGGATCTGGTAAACTAAGAGACCGTTATGCTTGCAAATTTTGTGGAAAAGTATTTCCACGTAGTGCTAATTTGACTCGGCATCTACGAACGCACACCGGTGAGCAACCCTACAAGTGCAAGTATTGTGAACGCTCGTTTTCCATATCGTCTAATTTACAGCGTCATGTAAGAAATATTCACAACAAGGAAAGACCGTTTAGGTGTCAGTTATGCGACAGATGTTTCGGACAGCAAACTAATTTAGACCGGCATTTGAAGAAACACGAAGCTGAAGGTGGAGATTCTCCGAGCTCTGGAGATACTGAACACGACGCTTGTTTTGATGACATTCGTTCTTTTATGGGCAAGGTGACATGTTCTCCCGGCGCTGGATCTCCCTCGACTAATTCACCACACTCCTCTCATCCTGCACACCCTCCACATCGTCCTTCCGCTCTTTCCATCTCCACCTAG
Protein Sequence: MRSTAAFGKNGVRSWLDGTTEKSNWFKLVRCTTSPDEANLQHEKFAGQIWYKLTREVSSGQELLVGPWTSLPLQDTLSATGRESSASLPHPQQEEEDREDTKPRCFFCEEPFPNIDALDRHLIQAHAQPASAYHCEYCNRAYSYRALLLRHRALSHTDIKKYPCENCPKVFTDPSNLQRHIRAQHVGARSHACPECGKTFATSSGLKQHTHIHSSVKPFQCEVCFKAYTQFSNLCRHKRMHIACKTLSGCRKCGQSFSSYASLAKHKRFCETATTPSVNLRGQIGQSLQQIPPLPNTMNNPNNTNPFPMYRGPALPLPYNTFAHYPAFISAAAAAACPPDFLSPLLFNVQGARLAMEHDLALNASLIAKQQQEERKSVKRETESIDSSTSVDLLHKGKDIVCDDKDMDVDRVTPKPQNHYVKQSPPSAEEATSKQRPSPVMPMSTTVGPFDFSRNEIKHNSLYDFPMKVNNNEKLENKSVSPQPKDLTKNITDDIEKRSRYSNMEQDKTTKEQNDQPLDLSVSRKPRDKESDVENDDNSFRNLSVKSYSPAESPIDRENKTPENETTDVDVEAVEPKREDSPVSMISPPLAFPMAVHAQHNNSLMNAMYPPRFSRFHSPSDSLLNSQHSPYVPSPFNFLSPLLGTDGPERQSSAYAKFRELSAGSGKLRDRYACKFCGKVFPRSANLTRHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKERPFRCQLCDRCFGQQTNLDRHLKKHEAEGGDSPSSGDTEHDACFDDIRSFMGKVTCSPGAGSPSTNSPHSSHPAHPPHRPSALSIST

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00461745;
90% Identity: iTF_00842876;
80% Identity: iTF_00461745;