Dlor008071.1
Basic Information
- Insect
- Dircenna loreta
- Gene Symbol
- -
- Assembly
- GCA_963555665.1
- Location
- OY743091.1:1554583-1558654[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 25 0.3 26 6.2 0.6 1 12 40 51 40 54 0.91 2 25 5.8e-05 0.005 17.9 2.1 2 23 101 123 101 123 0.97 3 25 3.5e-05 0.003 18.6 2.8 1 23 129 151 129 151 0.97 4 25 4.9e-06 0.00043 21.2 0.6 1 23 157 179 157 179 0.99 5 25 0.037 3.2 9.0 2.7 1 15 185 199 185 201 0.88 6 25 0.36 31 5.9 0.6 1 23 261 284 261 284 0.92 7 25 0.085 7.3 7.9 0.0 2 23 311 333 310 333 0.96 8 25 0.003 0.26 12.4 3.1 2 23 356 377 355 377 0.97 9 25 0.32 28 6.1 1.0 1 17 381 397 381 403 0.86 10 25 0.017 1.5 10.1 0.8 1 23 408 431 408 431 0.96 11 25 0.4 35 5.8 4.8 1 23 438 461 438 461 0.94 12 25 0.0011 0.092 13.9 1.0 2 23 469 491 468 491 0.96 13 25 0.041 3.5 8.9 3.6 1 23 497 519 497 519 0.96 14 25 8.4e-05 0.0072 17.4 1.8 1 23 525 548 525 548 0.98 15 25 7.6 6.5e+02 1.8 0.5 1 9 554 562 554 565 0.86 16 25 0.073 6.3 8.1 0.3 3 23 619 640 617 640 0.90 17 25 0.0057 0.49 11.6 0.5 2 23 666 688 665 688 0.96 18 25 0.0014 0.13 13.5 0.3 2 23 711 732 710 732 0.97 19 25 0.00067 0.058 14.5 0.3 1 23 736 758 736 758 0.96 20 25 1.9e-05 0.0016 19.4 0.5 1 23 763 786 763 786 0.98 21 25 1.3 1.1e+02 4.2 0.1 2 23 794 816 793 816 0.87 22 25 0.00032 0.028 15.5 1.7 2 23 824 846 823 846 0.96 23 25 5.5e-06 0.00047 21.1 1.3 2 23 853 874 852 874 0.98 24 25 1.2e-05 0.001 20.0 1.5 1 23 880 902 880 902 0.98 25 25 0.0054 0.46 11.7 3.5 1 23 908 931 908 931 0.93
Sequence Information
- Coding Sequence
- ATGCCAGCtgacttaaaaaaacacaatctAGACTCTCACACTCGAAATCTCAGTAATGAAGATGTAGAAGCTTTGGTCGCGCGGGATTTACATCAAGTGTGTATCAACACTGGAAATTATGCTTGCGATAAATGCCCCAAGATTTTTACCACTTACCCTAGAAAACGGTGTCACGAAAAGCAATACCATGAGAAGGCCCGGCTCGTTAATAAATGTGGATACTGCAATGCCTTATTCAAATGTAACAGACAAAAAGACCAACATCTGGTTAATGAACATGGAGTTACGTCATTTGCTAGAAAATGCCAGGCTTGCGATAAAACGTTCGTTCATCAAAATGCTTTACAGATACATATGAAACGGTATCACCTGGTGGAGAGGCCGCATAAATGTTCCGAATGCGATAAAGGATTTTTCTCTACCTCTGAGCTCAGAACTCATATGGTAAAGCACACTGGACAGCGTGAATATAAATGTGAAGTGTGCTTGAAATCGTATGCGAGGAGATGGACTTTGCGTGAGCATATGCGCATTCATGCAGACGATCGTCGGTTCAAGTGTGAACATTGTGGTCAGACTTTTGTGCAAAAGTGCAGCTGGAGAGGTGTACTACGTAAAACACtcaaaaaggaaaaaatagataaagacAAGGACTTCGTCCAGAAAGAAGGACTACCACGAAGTAGACAAGGAGAGTTGTTAGATAAACATCGAACGAATGTACGGGAAATTATTCAATGGTCGAATGCGACACCAATAAGATGTCGCGGTGGCATTGGCTATGCATGTTGCTTTTGTTCAGATCAGTTTCCGGATCCGGCTGATTTAAAAACGCATACTATTGAAACACATGACGACAGTACGAAGTCTAATTTCATGAAAGGAAGGGACATGTATGGATATTTCGTCAAGCTTGATATAACAGCTTTACAGTGCAACCTGTGTGGACTTGACGTTGACACATTAGAACAGGTAATGGACCATCTGAGGGTATCCCATGATAAAAACATCAGCACGGATATTTCTAACCATATCTTACCATTCAAATTTGACAGCGAAAATTTAAGGTGTTTTATGTGTCACAACATATTCAATAGATTTAAGGCATTACAAGAACATATGAATACGCACTATAGGAACTACATTTGCAAAGTTTGTGACGCAGGATTTGTGAACCGCCATCTTCTATTGTGTCACAATGAAGGTCACAAAACCGGGACATTCGCATGTGACCAATGTCCCAAAATCTTCGACACGTTGAGAAAAAGAAAGTTACACGAACGAAAGATTCACAACGGTTTGAACATGCCTCATAAATGTGGTTACTGCAATGAGAGGTTCAAGGAAAATTGTTACAAGAATGAGCACCTTGCCAAAGTGCACGGTATTGTTGGTCCTTTGATAAAATGTCAAGCTTGCGAGAAATCGTTTTCGTCGCAGCAGACCTGGCTGTTGCATATgaagaaatatcatttaatgcAGAGGCAGCATAAATGCACACGATGCGAAATGGAATTCTTTTCGAAGAGGGAATTAACTGATCATACGGTAAAGCATACAGGCAGCAGGGAGTACAGGTGTGAAATGTGTTTCAAGTCCTACGGACGGTTGAAAACGTTGAAGGAACACATAAGACGGTTACATCCAGAAGACAGAGACTTTAAGTGCGTCCATTGCGGTATGCGAACAATAAAAATCGAAAGGAAAATGGACGTACCGCGTGTGCAGTTGAAGTTAGTTAGCCGAAAACATGGCCGACTCTCTGACAACAAGAAAAATCAAGAAAATCTTATGCAAATATTGCTCAATTCTAATGCAAATCCTATTAGAAATAAAGATAGTCTCGGCTACGGTTGCGCGTTCTGTTCAGAACAATTTATTGAACCTAAGAAcctaaaaaaacactttttaggCGAACACAAAAGCGACAGgctcataaaaataatgtctaGCAAACTTTTTGAACATGTCGTCAAGCTGGATATAACGTACTTGCACTGTTCTCTGtgcaacaaaaatatagcCCAGCTGGATGAATTGATGGTCCATTTAAAAACTGAACATAGAAAGGAATTACATGTGGATATTAAAAGTTCAATTGTACCTTTCCGATTTGATACACCGCAATTACAATGCGCCGTTTGCAAAATTGAATATtccaattttaaacttttacagGAGCATATGAATTCCCATTTCGGTAATCATATTTGCGCGGTGTGTGGAGGAGGATTTGTCACCGAACGTCTTTTGACAACGCACATGAAGAGACATAAAACTGGAGAATATAAATGCGAAGACTGTGACAAAGTTTTTGataatgaagaaaaaataaaggagCATCAGAAGCGGGCCCATCTCGgtcataataaaagaaataagtgTTTGATATGTGAGGAAAGGTTTGTAGATTACTGGAAGAAAGTTGAACACATGGTCGAGGTACACGGGGCGCCACCGGTTGTGTTGAAATGCCAAGCGTGTGAACGATCTTTTCGAAATCAAAGAGCACTATCGAGGCACACGAAAAAGGATCATTTGAtggaaaggaaaaataaatgtccaGAATGTGAGATGAGGTTCTTTAGCAAAAGCAGTTTACAGCGGCATATGGCGAAGCATACAGGAATACGACAGTTCACTTGCGacgtttgttttaaatcttatGGAAGGAAGAATACTCTTAGGGAACACATGAGAATTCATGCTGATGATAGAAGATTTGCCTGTATCCACTGTGGGCAGGCGTTTGTACAAAAGTGCAGTTGGCGCAGTCATATGCGTTCTAAACACGGAGATGACGTGTAG
- Protein Sequence
- MPADLKKHNLDSHTRNLSNEDVEALVARDLHQVCINTGNYACDKCPKIFTTYPRKRCHEKQYHEKARLVNKCGYCNALFKCNRQKDQHLVNEHGVTSFARKCQACDKTFVHQNALQIHMKRYHLVERPHKCSECDKGFFSTSELRTHMVKHTGQREYKCEVCLKSYARRWTLREHMRIHADDRRFKCEHCGQTFVQKCSWRGVLRKTLKKEKIDKDKDFVQKEGLPRSRQGELLDKHRTNVREIIQWSNATPIRCRGGIGYACCFCSDQFPDPADLKTHTIETHDDSTKSNFMKGRDMYGYFVKLDITALQCNLCGLDVDTLEQVMDHLRVSHDKNISTDISNHILPFKFDSENLRCFMCHNIFNRFKALQEHMNTHYRNYICKVCDAGFVNRHLLLCHNEGHKTGTFACDQCPKIFDTLRKRKLHERKIHNGLNMPHKCGYCNERFKENCYKNEHLAKVHGIVGPLIKCQACEKSFSSQQTWLLHMKKYHLMQRQHKCTRCEMEFFSKRELTDHTVKHTGSREYRCEMCFKSYGRLKTLKEHIRRLHPEDRDFKCVHCGMRTIKIERKMDVPRVQLKLVSRKHGRLSDNKKNQENLMQILLNSNANPIRNKDSLGYGCAFCSEQFIEPKNLKKHFLGEHKSDRLIKIMSSKLFEHVVKLDITYLHCSLCNKNIAQLDELMVHLKTEHRKELHVDIKSSIVPFRFDTPQLQCAVCKIEYSNFKLLQEHMNSHFGNHICAVCGGGFVTERLLTTHMKRHKTGEYKCEDCDKVFDNEEKIKEHQKRAHLGHNKRNKCLICEERFVDYWKKVEHMVEVHGAPPVVLKCQACERSFRNQRALSRHTKKDHLMERKNKCPECEMRFFSKSSLQRHMAKHTGIRQFTCDVCFKSYGRKNTLREHMRIHADDRRFACIHCGQAFVQKCSWRSHMRSKHGDDV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00959568;
- 90% Identity
- iTF_00959568;
- 80% Identity
- -