Dlor000494.1
Basic Information
- Insect
- Dircenna loreta
- Gene Symbol
- MBD-R2
- Assembly
- GCA_963555665.1
- Location
- OY743087.1:4499684-4507100[+]
Transcription Factor Domain
- TF Family
- MBD
- Domain
- MBD domain
- PFAM
- PF01429
- TF Group
- Unclassified Structure
- Description
- The Methyl-CpG binding domain (MBD) binds to DNA that contains one or more symmetrically methylated CpGs [2]. DNA methylation in animals is associated with alterations in chromatin structure and silencing of gene expression. MBD has negligible non-specific affinity for DNA. In vitro foot-printing with MeCP2 showed the MBD can protect a 12 nucleotide region surrounding a methyl CpG pair [2]. MBDs are found in several Methyl-CpG binding proteins and also DNA demethylase [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 2.6e-15 8.2e-12 45.2 0.0 6 66 753 811 749 824 0.91
Sequence Information
- Coding Sequence
- atggctgtaaaaaaatgttgtgtaGAAAACTGTAATTCCTCCTCAACAAGACCAGAAGACATTGGTGTTACATACCACAAGTTTCCTAAAGATAAGGCATTACGTGATTTATGGTCATTGGTAACGCACTACAAACAAACTAACGTAGACTCTTCCACATACGTGTGTTCGCGACACTTTTGCAAAAacgattttcaaatatatcagGATTCAAAATACGTTCTTATATCAGATTCCATACCATCAATATTTTCATGGTCCAAAAGAGATATGGAGCTAAGTTCACGTGAATTAGAACCTAAAATGGATGAAAGTATGTCAATAAAAGTTACTGCTACTGAAGTAGAAAAACCGAAGACTACAGaagtaataaatactacaTCCAATAGAAAGATATCTGAAGGCGAAAATGTTGaggatataaaaaagtttatagaaGAGCAGGAACaggaaataaacaaacaaaatcatCAGCCACaggataaaatacaaaatgatgaAGAGGTGAATGATGATCACAATTTGAGGATAGACGACAACAATGAAATTCTTAATGAGTTGACAGAGCCTATGGTGATAGCTACAAGTGTGATGGATATGATCCTTTGTGAATCTGAAGCtaaaattgttacaaagaaaaatataaaattgattccacaaaaaataaatacaggagacaaaggAAATAGTGTATCACTATCAGTTGGATCAAAGGTAGAAGCCAAAGACTATGGAGAATTCTGGCATCCAGCTCATATTGTGGAAGTAGACTATGATGAAATGGAAGTACTTGTGCATTATGAAAACTCACCCAACAAACATGATGAATGGATAAGTGTAAACAGTCCTCGACTAAGGCTGATAAACAAATCTACGCCCATTATCCCAGTACAAGCAGTGCAACCTGAAATGAAATCTGATTTAAAAGATGATATTAAACAAGAAGAGAAGCCAAAGTTACAATATTTGGTTGGTGAAAGATGTTTAGCTCGATGGAGAGACAACAGACGTTTTGTAGCCACTATACTAACTGACCTAGGCAATGgcAGCTATGAGATAATGTTTGATGATGGGTACAAATGGAAATGCACAACATCCAGGATGTGTAAATTAAAAGAGACTTCGAAATCGGAACCTTTGTCCGTTGATACATCCATGTCACCGTCCGCTTCAAGTCTGTCTCCCGTTATCCCTGGAACTGGTCCAACTGGAAATAATCAATTTGGTTTCCATACACACCTATTCGATCCCACTCGCGATTATTTAGGATCAAAAAGTGAAAGACGCGAAATGAAGCGCAAGTTGAAcatcaaagaaatatttaatatcggtcagaaaaaacaaaagaaaaaggaTCCTTCCCAAGAAAAACCAAAAAttgttaaagaaaagaaaCCCAAAGTTGTGAAAAGAAAAACAGAGGCTAAACCTGAAGTTGAGCTTGAGGTGtcagaaattaatatagaGATTAAAAAGGAGATACCTGATGCCGTGGCTTCAATTATTGGAACTGTTAACGAAACTGAGAAAGATGTCTCAACAGACATCATAATGGATGATGATGTGGAGCACCcaattaaaaatgaagttAAATCTGACGAGAATGAAGCATATGAGGATGTTGAAGATACGGAAGTTGATCCAAATGACACGGTTAACTCTAATATGGTTGATGATGCTATAGTTAGTAACTCAGATCTCTTAGTACCTAGTGATTTAGGATTCCATCAAACCGAACCAATGTCGGACCCTgtgATGGAGGAGGAGGTGAAATTGGAAAACTTCGAGAAACCGGATGAAAGTAAACAGGAGGTTATAGAAAAAATGAAAGaagttatatgtaaattagaGGGTGGTCTTGAAATAGATAAGATTGATTCACCAAAACCTGAATCAAAAGATGTGAAGCCAGTAAGCGAAGTTAATACAAAAGTGTCTGATGACAAGTCCAAGAGGAAGTTGtcaaaagtaaagaaaagtaaaaaattgaGGTTGTTACAGGAGAAAAGGGTGAAGAAACAGGTGGAGAAAGTGAAGAACGAGTTGGAAGAAATGAAACGGCAGGTGGAAGAGATGAGAAAACAGATGTTGTTGAAGACTGAAGAGTTGGCTGTGAGACCTCATGAAATGCCTGAAAGTTTCCTTCTTCCTGGCGAGTGGTGTTGTAAATGGAAGAATGGTCAGCCAGTAGGCACCGTTAGCGAGTTTGAAGAAAAGACAGAAGGAAATAAAGGATTGACAAGAATGAGTGTACAAGTTGAAGACAAAAGGCTGCCTCCGGGTTGGGGGAAGCATATGGTGCGTCGAAGTTTTGGACAGTCCGCTGGGAAATGGGACGTTGTTTTGGTTggGCCAGACAATCGTCGATTTCACACTAAAACAGATATGCGGAGCTATCTGGAACATCAAGGTGATACTCTCAAACCCTACGAGCACGCATTACTAGACTTTGGAGTGCATCTAAAGTTATCCAGACGGATGGGGTGGTACTCCAACGATACTGGTGTTATACCTCCATTAAGGAAACGTAAGAAACTAAGCCTTAACAGAAAAGATGGAAAGAAACGAAAGAAGGAAAAAAATGTCAAGCATAAAatatctaTGGAAGGCCTCCCAGGAACGAGTGGACAGACGTTTTACCCAGAAACATGTGCAGTGTCTTTGGAAGATACTGCAGAAGATGACGATTCTGtgtaTGTTGGATCTTTAAAAGTCCAAGTAATTGATAATCTCCTCCGATGTCCTGCTGAAGGTTGCTTAAAAAACTTCCGAAATACAACCCTCTTGCAGATGCACATAAAACATTACCATCGAGAAATGAGACAAATGCTAGGAGCCACTCCAAAAGTTTTGGACTTAGCCCGAGAAAGAACCAAACCATCAGACAATGAAGTCAAAAAGACTGAGTTTGAATCGAAAATTATTAAGGTTAAGCTTCCAAAACTACCAAAACGAACCGAGGAACCGAAATTGGAAGTGAAGGAGCCGATTGTACCTCAAATTGATACACGAGCAGGGACTCCAACTAAACTAGAAGTGCCCATACCAAGGTCCCAAGACTCGCCGAAATTACGCCAAGCTCTTGCCACTAAACCCGTAAAACGACCAAAAGTCTTACTCCCTGTGAGACGACCGGATCCAGAAGAGATGGTGGAAGAAAATGTAGATATCATTGATCCAATGGTCAGTGAAAAGTCAGATTTCGACTGCGACAACTCAAATCAGACACCGCTTAAACCATTTGAAGAATTTCGTCGAAAATCCGAAAAGAAGCGTAAATGCTTCTCTACGGTGTCTAGGAGACCTATAAGTGAGGAAGACGACTGGTTTGGCATGAACTCTGATATCGAGACTCGGTCTAGTTTCCCGGGGTCTGGCACACCAGACTCTAAAACAATGGACAAACTGATTCCGCCAGTTTCGTCGGAGTCTAATGAAGATCAAAAAGATGGCAAGATGTATATGTATACAGagaCGGGGGAACGTATCAAGCTGGAACACATGAAGCGGGAAGAGATCATCAACTGCCACTGCGGCTTCCGGGAGGAGGACGGGCTCATGGTGCAGTGCGAGCTGTGTCTGTGCTGGCAGCACGCTCTCTGCCATAACATACACAGGGAGGCTGAGgtCCCAGAAAAATACACTTGTAGTATATGCCTCAATCCTCGTCGCGGGAGACGTTCCAAACGATTCCTACATGACCAGGACAGACTGTACGAGGGTTTGCTGCCGGGGGCGAAGCCTTGCGAGTCTCTACGACGGTCTCATGAGCTGTCTGCCAACCTACTGAAAATTCAAGATGCTCTGCACGCCATGAGAGTCAAGTACTATGTGGCTACCAAGAAAGATCATCCGAAGTTATACCTCTGGGCTAAGGACTGGGAGAGTCCGGAAGTAAATTTTGCACAAGATTGTCTGAATTCAGATTATTCTGaccttaatattattgttaataacatTGACAAGGAGAATTTACCTTTGAAACCTGATGAAGTAAATCCACATCTCGATATAAGAATGCCTATAACGGAAGAGTCTGATCATGAAAGGTTCAGTCAAAGAGATAATTCGctattaagtttaacaacTGCTTTGTCCAGTCCAAGTGGCGCGTCTTTAGATCTTCCTATCACTACCTCTGAGTTGGAGCGGTTGGCAAAATCTGTccaagAACAAGAAGTACAAAGAGTGGTGGTGCCTCAGCCCGAGGCGGCGATAGAGAACAGTGAGTGTAGAGAGCGACTCCTGAAACATGTACAGCGTTGTCAGGCGCTCATGGATGCCAGGCTAGACTCTATTGAGGCTCAAGTAGCCGaatTGGAGTCTCAAGATCCTTCGTTCGAGGATGACGAAACTGCAGACTTCTTCCCAAGAACCAAACAAACTATACAAATGATGATGAAAGATTTAGATACTATGGAAGAACTTGGGATTATAACCTAA
- Protein Sequence
- MAVKKCCVENCNSSSTRPEDIGVTYHKFPKDKALRDLWSLVTHYKQTNVDSSTYVCSRHFCKNDFQIYQDSKYVLISDSIPSIFSWSKRDMELSSRELEPKMDESMSIKVTATEVEKPKTTEVINTTSNRKISEGENVEDIKKFIEEQEQEINKQNHQPQDKIQNDEEVNDDHNLRIDDNNEILNELTEPMVIATSVMDMILCESEAKIVTKKNIKLIPQKINTGDKGNSVSLSVGSKVEAKDYGEFWHPAHIVEVDYDEMEVLVHYENSPNKHDEWISVNSPRLRLINKSTPIIPVQAVQPEMKSDLKDDIKQEEKPKLQYLVGERCLARWRDNRRFVATILTDLGNGSYEIMFDDGYKWKCTTSRMCKLKETSKSEPLSVDTSMSPSASSLSPVIPGTGPTGNNQFGFHTHLFDPTRDYLGSKSERREMKRKLNIKEIFNIGQKKQKKKDPSQEKPKIVKEKKPKVVKRKTEAKPEVELEVSEINIEIKKEIPDAVASIIGTVNETEKDVSTDIIMDDDVEHPIKNEVKSDENEAYEDVEDTEVDPNDTVNSNMVDDAIVSNSDLLVPSDLGFHQTEPMSDPVMEEEVKLENFEKPDESKQEVIEKMKEVICKLEGGLEIDKIDSPKPESKDVKPVSEVNTKVSDDKSKRKLSKVKKSKKLRLLQEKRVKKQVEKVKNELEEMKRQVEEMRKQMLLKTEELAVRPHEMPESFLLPGEWCCKWKNGQPVGTVSEFEEKTEGNKGLTRMSVQVEDKRLPPGWGKHMVRRSFGQSAGKWDVVLVGPDNRRFHTKTDMRSYLEHQGDTLKPYEHALLDFGVHLKLSRRMGWYSNDTGVIPPLRKRKKLSLNRKDGKKRKKEKNVKHKISMEGLPGTSGQTFYPETCAVSLEDTAEDDDSVYVGSLKVQVIDNLLRCPAEGCLKNFRNTTLLQMHIKHYHREMRQMLGATPKVLDLARERTKPSDNEVKKTEFESKIIKVKLPKLPKRTEEPKLEVKEPIVPQIDTRAGTPTKLEVPIPRSQDSPKLRQALATKPVKRPKVLLPVRRPDPEEMVEENVDIIDPMVSEKSDFDCDNSNQTPLKPFEEFRRKSEKKRKCFSTVSRRPISEEDDWFGMNSDIETRSSFPGSGTPDSKTMDKLIPPVSSESNEDQKDGKMYMYTETGERIKLEHMKREEIINCHCGFREEDGLMVQCELCLCWQHALCHNIHREAEVPEKYTCSICLNPRRGRRSKRFLHDQDRLYEGLLPGAKPCESLRRSHELSANLLKIQDALHAMRVKYYVATKKDHPKLYLWAKDWESPEVNFAQDCLNSDYSDLNIIVNNIDKENLPLKPDEVNPHLDIRMPITEESDHERFSQRDNSLLSLTTALSSPSGASLDLPITTSELERLAKSVQEQEVQRVVVPQPEAAIENSECRERLLKHVQRCQALMDARLDSIEAQVAELESQDPSFEDDETADFFPRTKQTIQMMMKDLDTMEELGIIT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00461624; iTF_00959426; iTF_00960231; iTF_00959470; iTF_00960187; iTF_01034662; iTF_01033807; iTF_01034610; iTF_01033757; iTF_00842744; iTF_00842699;
- 90% Identity
- iTF_00842699;
- 80% Identity
- iTF_00461624;