Dros026457.1
Basic Information
- Insect
- Diplolepis rosae
- Gene Symbol
- -
- Assembly
- GCA_030998225.1
- Location
- JAPYXD010000604.1:1543316-1546882[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.66 1.9e+02 4.6 1.2 1 20 103 122 103 132 0.95 2 13 0.011 3 10.3 4.6 2 23 267 289 267 289 0.91 3 13 3.6e-05 0.01 18.0 2.2 2 23 358 380 357 380 0.95 4 13 5.9 1.7e+03 1.6 7.6 3 23 466 487 465 487 0.95 5 13 0.049 14 8.2 0.3 3 23 538 559 537 559 0.94 6 13 2.2e-05 0.0062 18.7 0.9 1 23 610 632 610 632 0.97 7 13 0.0015 0.42 13.0 0.3 2 23 658 680 657 680 0.93 8 13 0.0077 2.2 10.7 3.6 2 23 724 746 723 746 0.96 9 13 0.1 30 7.1 4.2 3 23 761 782 759 782 0.92 10 13 0.00015 0.043 16.1 0.1 2 23 827 849 827 849 0.93 11 13 0.037 11 8.6 1.4 1 23 928 950 928 950 0.98 12 13 0.00047 0.13 14.5 6.3 2 23 966 988 965 988 0.96 13 13 0.0048 1.4 11.3 0.5 1 23 1063 1086 1063 1086 0.98
Sequence Information
- Coding Sequence
- ATGACGTCTACAGTGGCTCAGGAGATGCGACTACCTGAACCAGCAGAGTTCGACAGCGATGGGTCCAGCAGTGAAGACCGAGATGCCAGAAAAAGGCTCCTTGGAGAGGTCGACTCCACAGGTCCAAAAAAAAGACGAAAACAAGCAACTCCTGTGAGATTCCCAACTTCTTTGATGCTGGGTGATCACCCAGAGTCTGAAGAAGAAGAGGAAGATACTGGAGATGAGGAAGGTAAGCCGAATTCGCTACAAGCGGAGTCGCTTCAGGGCCATCCAACAACGAAAGACGAAAATTTGAACATTGAATTCCGTTGCCAGTATTGTAGTCAATTGTTTGATGGGAAAACATCACTCGACCTTCACCTCGAATGTGAACATAATTTTGTAAGCGCGTCCTATATAAATTCAGAAAACCATTCACCTGAACCAGGAACTCAAGTTCAGACGAACGTAGAAACGATCAATCATCAATCTGATCAGTCTGTTAATTTGGTTAATCTCCCTGCTATCGAAATCAAGAATTTAGCGTCCACTTGGCTCTCTGACCATGTGCAATCTCAGATTCATAATCAAAATCAAGCCCAGGCTCAAACCCAGCAGCAGAACGAGGAATGGTCAGCATCCTGTCATATGAGTCCTATCACCTCCTTACCAAGTCATTTGCAGGGATTACCAACGTTTACTGGAGGACTGCCTCAATTTTTGCCTTTACCCCCAGGATTCCCTCTCTCGGATTCTAGCCAGTTACATCGAACCACGTTAGGACCAGCTCCTGTAAGGATTTTTAATCCCGACGCTTACTGTGATCTCTGcaataaagaattttgtaataagTATTTTCTCAAAACGCACAAAGCTAATAAACATGGAATATATGTGGATTCTCCAAATCCGATGACAATGGGAGAGAACAATGTGACAGTAGGACCACTTTATCCTATAGGACCATTACCCCCGAATAACATCAAGTTAGAACCAACTCTGAAATTAGAAGGTAGCCCAACAATTCAGCTACCACAACCACCTCCACTAAATCTTCCTCAATCTCAACCACCATCTACTCCCACTGTTCCTTGTGACGTTTGTCATAAGAGATTTCGGAACGAAGAATCTCTCAAAAAGCACAAACAAAAAGTACATACTGATCAGTCGAATCAGCTCAATAACTCCCAAGTCCAGTCAGGATCTACAGCCGATGATGAATCGGAGGTAAGTCAACAAAGTCCTGGAGCAATGGAAATGCTCTTTAAGCAAGAGTACGGAATTGAACAAGAGGACAACTCCTTCATGCCACCACCAAGACATCTATCCCCACTTGCAATTCAACAAGCCAAGGAATCTGGTTTTAGCGCGGAACGTCTTCGCAGACTGGGAATACTAAATCCCGATGCATTTTGTGAAATTTGCTGCAAGGAGTATTGCAATAAATATTTTCTGCGTACTCACAAGATGAAGAGGCATGGAATAATCATCCAGGATAATGAAAAGCCGCCAATTAATCCAGGATCTGCTGCCACCTGGCACCAAGTGCAAACTAGTCCATTGAACTTGATCATGAACGAGACAGGCAATGATTCTGAGTACAGTGATCGCTCTATTGATGAAAATGAGTGCAAACCTTGTGGGATACGTTTTCAAACTCAGGGACTGTACGAATCTCATCGACAAAGGGTTCACACTAGTGAAGAACAAATTTCACCTAAATTAGAGCTAGAACAAGAATCTTTAGAACAACGTACGATTTTAAACAACGATTCTATTTCAGAAGATCTTCAAAAACTGCAAACTATGATTTTACAACTGAATGGTTTAGAGgctaataaaatttattcgtgCTCCGTTTGTGGAAAAGAGTGTGATTCCAAAGCCAGTTTACGAACGCATATGATTGAACATGGAATCACTGCAGAAGATCCAGTTTCTCCATCACAAGGGGCAGAAAAATGTTCGACTCCAGTAAATTCCATGACATATTGTACTCTGTGCGAAAAGGAGTATCAGAATCAGGAAGCATTGAGGAAACATATCTCAGAAGATCACAGACAACCGATTTCGTCCTATGATTCAAACCCTTTGTCACAGGGACAACCGATTTCTATGCCTTCAACGCCGACATCTGCTACACAAGCATCTGAACGCAAATCATCTTCGTTGACTCCTACATCTAGTTACTGTGAAATTTGCAATAAAGAACTCTGTAACAAGTACTTTATGAAGACTCACATGCAACGGATGCATGGCATCGAAATAGAAAACGGGGCTCAAATCGGTGGGGTAATCTGCAATATCTGTAACAAAGAACTGTGCAGTAAATATTTCTTACGTGTTCATAAACACAACACTCATGGAATTGTGGAAGAAGGTTCGAATCTTCCAACCAAGCAAGAATCCCTGGATCCAGTCAGTTCAGACGACTCAGCTTTAAAACCTGAACAACTTGGAGATTTGAACCATCGATACTTCACCCACTTCACTGAGGTGTGTCCAATTTGCAACAGGAGATTCAGAAGCATCAAATGGCTCAAAGCTCACTTGTTAGGTGATCACGGCAAAACGGGGATCGATAAATGGAAGGAAATGGAACAGCAGTACCAAGCAACTCAAAGAACAAACAACAGATTAGCCGGGACGTCAAGAATCAGCCACCAGagtacaaatttaaaaattcccaaTGGTTTTGAATCCTCTCAAAACAAAGCCACAGATCTGAGTTCAAGTCTGGGTAATCAAGTCCTCTCAAACTTGTTCGGATCATCAGCCGAAGAACAGCAATCCAAGAGCTACAGATGCTCGTACTGCAACTTCTCTACTAGTGTTCTACCATTCCTTTTCCTTCACGAAAGGTCTCATGTCAATCTCCAGGAAACTCCAGCAGCTGAAAATGAAAGGGTTCTCCAATGTCCTATCTGTCCCCACAGGTTTTCTCAACCAGAACACTTTCATCATCATCTGCTCACGCGTCACCAGTTTCCCAATTTGCTTTCTCAATTCCCAGCTCCTATTTTCAACAACATCAGGCTAGAAGCTGTTGGTGAGAAGAACAACGAATCGAAAGAAATATCAGAAATGGAACCAGAAGAACGTAAACAATCGAGTCCTAGGGTCCAGAGTAATTTTAACGAAACTGAATTAGGTAATGCTCAGAAGCAGAATGATACAGCGGTAGAAGTAACCCCCCAGGGGGTGTACAAGTGTGCCCAGTGTGGATATGCAACTGTGAATTTAAATCGCATCAAAAAACACATTAGGAAAGATCATAAGGGATTTGGAGAACCAACGGAAAGTGTTATTGCAGAGTTAAGCAAGATTCTGAAAGAGGTTGCAAACAAACACAAAGTTCCTGCAAGTTACGCGATGCCCCAGGACATGAACTCGAATCCAGACAAGACTATAATGCAACCTTTTCTAATTGAAGAGCAGCAATTATCCCCATCTCAGGATTGTGGCACAACTGGTGGGGAGGAATCTGGACCTGTAAAGCGTTTCACACCAGCCTTGGTCTACTTGCCAGTTAGAGCGAGAATCAATGGTTCCCTCACAGCGTCTTTCACCTTGAGTCCTGCATGA
- Protein Sequence
- MTSTVAQEMRLPEPAEFDSDGSSSEDRDARKRLLGEVDSTGPKKRRKQATPVRFPTSLMLGDHPESEEEEEDTGDEEGKPNSLQAESLQGHPTTKDENLNIEFRCQYCSQLFDGKTSLDLHLECEHNFVSASYINSENHSPEPGTQVQTNVETINHQSDQSVNLVNLPAIEIKNLASTWLSDHVQSQIHNQNQAQAQTQQQNEEWSASCHMSPITSLPSHLQGLPTFTGGLPQFLPLPPGFPLSDSSQLHRTTLGPAPVRIFNPDAYCDLCNKEFCNKYFLKTHKANKHGIYVDSPNPMTMGENNVTVGPLYPIGPLPPNNIKLEPTLKLEGSPTIQLPQPPPLNLPQSQPPSTPTVPCDVCHKRFRNEESLKKHKQKVHTDQSNQLNNSQVQSGSTADDESEVSQQSPGAMEMLFKQEYGIEQEDNSFMPPPRHLSPLAIQQAKESGFSAERLRRLGILNPDAFCEICCKEYCNKYFLRTHKMKRHGIIIQDNEKPPINPGSAATWHQVQTSPLNLIMNETGNDSEYSDRSIDENECKPCGIRFQTQGLYESHRQRVHTSEEQISPKLELEQESLEQRTILNNDSISEDLQKLQTMILQLNGLEANKIYSCSVCGKECDSKASLRTHMIEHGITAEDPVSPSQGAEKCSTPVNSMTYCTLCEKEYQNQEALRKHISEDHRQPISSYDSNPLSQGQPISMPSTPTSATQASERKSSSLTPTSSYCEICNKELCNKYFMKTHMQRMHGIEIENGAQIGGVICNICNKELCSKYFLRVHKHNTHGIVEEGSNLPTKQESLDPVSSDDSALKPEQLGDLNHRYFTHFTEVCPICNRRFRSIKWLKAHLLGDHGKTGIDKWKEMEQQYQATQRTNNRLAGTSRISHQSTNLKIPNGFESSQNKATDLSSSLGNQVLSNLFGSSAEEQQSKSYRCSYCNFSTSVLPFLFLHERSHVNLQETPAAENERVLQCPICPHRFSQPEHFHHHLLTRHQFPNLLSQFPAPIFNNIRLEAVGEKNNESKEISEMEPEERKQSSPRVQSNFNETELGNAQKQNDTAVEVTPQGVYKCAQCGYATVNLNRIKKHIRKDHKGFGEPTESVIAELSKILKEVANKHKVPASYAMPQDMNSNPDKTIMQPFLIEEQQLSPSQDCGTTGGEESGPVKRFTPALVYLPVRARINGSLTASFTLSPA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00677065;
- 90% Identity
- -
- 80% Identity
- -