Dcar002424.1
Basic Information
- Insect
- Diorhabda carinata
- Gene Symbol
- -
- Assembly
- GCA_029229535.1
- Location
- CM055253.1:3055973-3058605[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 5 0.0016 13 6.5 0.0 20 45 217 241 212 243 0.79 2 5 1.1e-07 0.00095 19.7 0.1 20 45 243 268 240 272 0.91 3 5 0.59 5e+03 -1.8 0.1 27 44 307 321 304 325 0.64 4 5 0.0054 46 4.7 0.0 21 45 326 350 322 357 0.84 5 5 0.0097 83 3.9 0.0 21 45 354 378 350 384 0.86
Sequence Information
- Coding Sequence
- atgaatgatATTTGTCGAACTTGCTTAAGCAGTTCCAATCTTTCCCCAATGGAAAATTATGAAAGTCTAACCGAAAAAATTGAAGCGATATCTACTGTTAAaGTAGTATTAGATGCCCCAAATTTCCCCACAGTAGTATGTGATGAATGCGttaataagataaatattttctattgttttcaaaaagttattataaatagtgaTAAGGTGCTTAAACAAAAATGTGCTAGCATTCTAAATCAAagtgttgataaaaaaaatagttcaaaaataagtaaaagtgTTAATTGTGATAAGTCTGATAATaagaaaactacaataaaaaaaatcaaaagtagtCCAATATGTACATCAAAGTTAGaagatattaaaattgaaactgaGCAAGATATAAGTAGCTTCAATGGAATAATTAATAAGGAAGAAGTgtttatcgaagaaaaacctGATAAAGAAGACACTTGTGTATCTTTAAAAGATAAAAAGCTAAAATGTAAAAGTTGTATGCTAGATTTTACTACAAAATCAGAATTACTGGCTCATAGGAAAACTTTTCATAgaacatttaaaaaagaaaaatctctCTATTGTAATGACTGCAACATAACATTTACCTCCCAAGCGAAATTGTTAAATCATAAAAGGAACACCCACACTGCACCTGGTATATGCAATATTTGCGGAATGATAGTAAGAgcagataatttaaaaaaacatgtgCAGAGGCACTCTGAAGAACCTGCAAACTGTAATATATGtttgaaagttttgaaaaattcagaGTCATTAAGAGGCCATTTATTGATACACAAAGATACTTTATATGGATGTCAAGAGTGTAATAGAACATTCAAATTGAAATCAGAATATAACAGACACTTAAAAAAACATACTGatccaaatattcgtaaaaaaatgtgtaagaTATGTGGGAAGTATGTACGAGACATCCACAGACACCTTTTAACACATTCTGGAGAACGACCTTTCCTCTGCCCTTACTGTAACAAAGGTTTGAAAAGTTCTTATGCCCTTAAATTACATATACGTCAACATACCAACGAAAAACCGTTTACATGCGAATTCTGCAATAAAGCATTCGCTCAGAAGATATCGCTATTGGCACATTTGAAATCTAAAGCACATACAGAggaaaaaaagtga
- Protein Sequence
- MNDICRTCLSSSNLSPMENYESLTEKIEAISTVKVVLDAPNFPTVVCDECVNKINIFYCFQKVIINSDKVLKQKCASILNQSVDKKNSSKISKSVNCDKSDNKKTTIKKIKSSPICTSKLEDIKIETEQDISSFNGIINKEEVFIEEKPDKEDTCVSLKDKKLKCKSCMLDFTTKSELLAHRKTFHRTFKKEKSLYCNDCNITFTSQAKLLNHKRNTHTAPGICNICGMIVRADNLKKHVQRHSEEPANCNICLKVLKNSESLRGHLLIHKDTLYGCQECNRTFKLKSEYNRHLKKHTDPNIRKKMCKICGKYVRDIHRHLLTHSGERPFLCPYCNKGLKSSYALKLHIRQHTNEKPFTCEFCNKAFAQKISLLAHLKSKAHTEEKK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00459271;
- 90% Identity
- iTF_00459271;
- 80% Identity
- iTF_00459271;