Basic Information

Insect: Diorhabda carinata
Gene Symbol: -
Assembly: GCA_029229535.1
Location: CM055258.1:32030701-32033038[+]

Transcription Factor Domain

TF Family: zf-GAGA
Domain: zf-GAGA domain
PFAM: PF09237
TF Group: Zinc-Coordinating Group
Description: Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.17 1.4e+03 -0.0 0.2 23 45 186 208 181 214 0.82

2 12 0.02 1.7e+02 2.9 0.0 23 45 238 260 235 268 0.82

3 12 0.15 1.3e+03 0.1 0.1 18 36 260 279 256 290 0.71

4 12 0.0016 13 6.5 0.0 22 44 321 343 317 346 0.92

5 12 0.0058 49 4.6 0.0 21 51 348 378 343 380 0.83

6 12 0.13 1.1e+03 0.3 0.0 21 45 376 400 372 407 0.80

7 12 0.0031 26 5.5 0.0 23 48 406 431 400 436 0.84

8 12 0.0096 82 3.9 0.0 21 44 432 455 429 459 0.90

9 12 6.3e-05 0.53 10.9 0.3 21 46 460 485 453 490 0.87

10 12 0.01 89 3.8 0.1 26 44 493 511 486 516 0.88

11 12 2.6e-05 0.22 12.2 0.1 21 46 516 541 512 546 0.91

12 12 0.02 1.7e+02 2.9 0.1 26 45 549 568 540 572 0.86

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.17	1.4e+03	-0.0	0.2	23	45	186	208	181	214	0.82
2	12	0.02	1.7e+02	2.9	0.0	23	45	238	260	235	268	0.82
3	12	0.15	1.3e+03	0.1	0.1	18	36	260	279	256	290	0.71
4	12	0.0016	13	6.5	0.0	22	44	321	343	317	346	0.92
5	12	0.0058	49	4.6	0.0	21	51	348	378	343	380	0.83
6	12	0.13	1.1e+03	0.3	0.0	21	45	376	400	372	407	0.80
7	12	0.0031	26	5.5	0.0	23	48	406	431	400	436	0.84
8	12	0.0096	82	3.9	0.0	21	44	432	455	429	459	0.90
9	12	6.3e-05	0.53	10.9	0.3	21	46	460	485	453	490	0.87
10	12	0.01	89	3.8	0.1	26	44	493	511	486	516	0.88
11	12	2.6e-05	0.22	12.2	0.1	21	46	516	541	512	546	0.91
12	12	0.02	1.7e+02	2.9	0.1	26	45	549	568	540	572	0.86

Sequence Information

Coding Sequence: ATGGATATCCtaaatattaaagaagaaatggATATTTACGAGGATTTTACATCCATTGTCGATGTTGGGAAAGAATTTATTGATGAAGTATCTACACTAACGATTCAAAATGTAATTGGAAAGGTGGATGGAATTCAACCAATAAAACATCTAATAAAAGATGAATTAGATacattggaaatatttaataaccaTGTGGATATAGGACTGTTAAGTAAATGGAAATATATCCAACCAAATGCTATGGGATTAATGATATGTAAATATTGTGGGAATTTATACACAAAACAAGTGGAATTTTTATGTCACTTTTCCACATGCCAttgtataaaaagaaataagattaaACATCCCCTTAAAAATTGTGTTTTGAGAAAGATTAATGTGAAAGATGAAATTGAAGTAGTTGAACATCAATTTAAACAAGACTTGCAGGACACCACAAACCAGTTGGATGTTACTGATAATTTAAACACAAATGCACACGAGGATTCAAAATCTTTTGTAGAGGAGGAAAGTCATCCAAATATACAGTTGAATACTTGCACGGGATCAAAACCATTTTATTGTGTTATTTGTTTGAGAACTTTTACACGTAGAAGTAATTTAAGCAGCCATTTTCGTATTCacatcaaagaaaaacgtttcAAATGTGATTCTAATGAAACtgttcataaaattaatttaaataagtatttgCCTATAAGAGAAAAgtcattcaaatgtgacatttgtttcaAACTGTTTCCAAATAGAAGTAATTTGAAGACACATATGCGTAGCCACACAAgggaaaaaccattcaaatgtgacgtTTGCTCGAAAATTTTCTCACGGAATGCTACTTTAATCTCACATTCACTTATTCACAcaggaaaaaagaaatttaaatgtGAATTATGCTTAGAAACATTCttaaacaaaattcaattgaCCACACATCTACATAATCACTTTGGAGAAAAGCCAtacaaatgtgacatttgtttgaaacaattttcacaaaaaagtaatttgaaGACACATATGCGTAGCCACACAGGAGAAAAACCGTTCAAATGTGAcgtttgtttaaaaactttttcacagaACGCTAGTTTAATCACACATTTACGTATacacacaggagaaaagccatttaaGTGTGACGTTTGCTCGGAAACTTTCTTACAGAAAATTCAGATGACCACACATCTACGTAATCACTTTGGGGACATGCCAtacaaatgtgatatttgtgaaaaaaagttttcgcgGAAAAACAATTTGAACAGACATTTGATTAtccatacaggagaaaagccattcaaatgtgacatttgtttgaaaacgtTTACACAAATGAGTAGTTTGAATACACATTTGCGTAGCCATACAGACGAAagaccattcaaatgtgacatttgtttgaattcATTTCGATATGCACATTATTTGAAGAGACATTTGCGTATTCATACAGAAAACGAAACttttaaatgtgatatttgcttgaaaacattttcaagaaaaactaatttgaatagACATTTGCTTAGTCATACAGAAGAAAAACCGtacaaatgtgacatttgtttgaattcATTTCGGTATGCAAATAATTTCAAGAGACATTTGCGCATTCATACAGAAGACGAAACttttaaatgtgatatttgtttgaaaacatttttaagcAAAACTAATTTGAATAGACATTTGCGTAGTCACGCAGAAGAAAAGCAGCGTGATTGa
Protein Sequence: MDILNIKEEMDIYEDFTSIVDVGKEFIDEVSTLTIQNVIGKVDGIQPIKHLIKDELDTLEIFNNHVDIGLLSKWKYIQPNAMGLMICKYCGNLYTKQVEFLCHFSTCHCIKRNKIKHPLKNCVLRKINVKDEIEVVEHQFKQDLQDTTNQLDVTDNLNTNAHEDSKSFVEEESHPNIQLNTCTGSKPFYCVICLRTFTRRSNLSSHFRIHIKEKRFKCDSNETVHKINLNKYLPIREKSFKCDICFKLFPNRSNLKTHMRSHTREKPFKCDVCSKIFSRNATLISHSLIHTGKKKFKCELCLETFLNKIQLTTHLHNHFGEKPYKCDICLKQFSQKSNLKTHMRSHTGEKPFKCDVCLKTFSQNASLITHLRIHTGEKPFKCDVCSETFLQKIQMTTHLRNHFGDMPYKCDICEKKFSRKNNLNRHLIIHTGEKPFKCDICLKTFTQMSSLNTHLRSHTDERPFKCDICLNSFRYAHYLKRHLRIHTENETFKCDICLKTFSRKTNLNRHLLSHTEEKPYKCDICLNSFRYANNFKRHLRIHTEDETFKCDICLKTFLSKTNLNRHLRSHAEEKQRD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00459151;
90% Identity: iTF_00459151;
80% Identity: iTF_00459151;