Dcar006115.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Diorhabda carinata
Gene Symbol
-
Assembly
GCA_029229535.1
Location
CM055254.1:22469953-22478752[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 17 0.11 10 7.3 0.3 2 23 38 59 37 59 0.92
2 17 0.14 13 7.0 2.4 1 23 65 87 65 87 0.98
3 17 0.018 1.6 9.8 2.8 1 23 93 115 93 115 0.91
4 17 0.018 1.7 9.8 1.7 1 23 121 144 121 144 0.97
5 17 0.00016 0.014 16.3 1.5 1 23 156 179 156 179 0.96
6 17 4.8e-05 0.0044 17.9 0.3 3 23 190 210 188 210 0.97
7 17 0.00017 0.016 16.1 0.3 1 23 216 238 216 238 0.96
8 17 7e-05 0.0064 17.4 3.4 1 23 244 266 244 266 0.99
9 17 0.0053 0.48 11.5 0.0 1 16 272 287 272 293 0.82
10 17 0.041 3.8 8.7 0.0 3 23 392 412 390 412 0.93
11 17 0.0039 0.36 11.9 2.2 1 23 446 468 446 468 0.90
12 17 8.2e-05 0.0075 17.2 2.5 1 23 474 497 474 497 0.98
13 17 0.00014 0.013 16.4 1.7 1 23 509 532 509 532 0.94
14 17 0.02 1.8 9.7 3.0 3 23 543 563 542 563 0.99
15 17 6.1e-05 0.0056 17.6 1.7 3 23 571 591 569 591 0.97
16 17 1.2e-05 0.0011 19.7 0.7 1 23 597 619 597 619 0.99
17 17 0.0001 0.0094 16.8 0.0 3 22 627 646 626 646 0.95

Sequence Information

Coding Sequence
ATGTATGGAAGGATTATCCGTAAAAAGCGTTCGTCAAAGAAACATTTAAACAAAATAGAACAAAAGAAAAGGAAGCCCTCGATTCTGCCAGTAAAACTGGAAATACCTCTATCATGTTCACAATGCAACACAGATTTCTACACAAATGTCGAATATGCCTTACATTCCATAAATCATAGTAAAGATGAGAAATACTCTTGCCATTTTTGTGAGTACACAAATAACTCCAAGTACCGTCTAGAAGCCCATGTTAGAGCTCACGAAGGTTCTTCGAAGTACAAGTGCGAAATTTGTAATAAACCCTTCAATATAAGCACTCATGCAAAGGAGCATAAGTATTTCCATACTGGAGAGAAGCCTTTTCAATGCGAGATATGTGGTGGACATTTTATGTTTTCGAGAATATTAACCAAACACAGGCGATCGGCACATTACGAAGTTATTTTTGGAAAACCCTTGGCCAAATACGATTGCAAGATATGCAACAAGCATTACGAATCTCTTCCCGGTCTTCAACGCCACATGTACAGCAACCATAACGACAACGGTGCTGACTGGTCGGTAATATGTGATATTTGCGGAAAAAAAATTGCGTCAAAAGAAAAGTTAAAATACCATTTAAGAACTCACACGGGGGACAGACCGTTTGCATGTGTTTCTTGTCCAAGAAGATTTCCAAAAAAGGATCAATTAAAGGAACACGAAAGAGTGCATACAGGCGAAAAACCTTTCACTTGTACTTACTGTGGGAAGAATTTCGGTCATAGGGCTCCGTTTAGGTATCATATTAAAACGCATACGGGTGAAAAGCCTTATAATTGTCCTATTTGCGGGAAAGGGTTTATATCAAAAGCTGCTCAATCGGGACATGCACTTACAtgcataaaaaaggTAAATATTGTACcagaaataaaattagaatatgaTTTTGATTCCGAAACTGAGTGGATtccaaaagaagaaaaaatgaaaaagaccaaattattcaaaaaaaaattaaaaaaagagagaaagGAAATGAAGGAGAAACTAAGAAaggaaaagaaattaataaaggaCGGAACAGAGATAAAGAAACCAAAGAAAATTGGaagagaaaagaaagaaaagaaacgTAAACAGCGTATTAGCGAAGATCATCCACCTGTCGGAGAATTAGACGAACCGATAATATGTGATGTCTGTGAACAAACGTACAAAAATAACGTGGCGTTCGCCTTACATTCCATAGTTCATAGTGAAGACGGTAAATATCACTGCCATTTGTGTTCATATAGAAACGCTTCAAAATACCACATAGAAATGCATGTTCGAGCCCACGAAGGTGCGACCAAATATAAATGCGAAATATGTAATAAAGCTTTCACCGTTAGTACTCACGCTTTAGAACACAAATACTTCCATACCGGCGAAAAACCATTTCAGTGCGAAATATGTGGAAAACATTTCATGTTCTCTTGGTTTTTAGCGTCGCATAGACGAACTTCACATTATGAAATCCTAACAGGTAGCCCCCTAGTGAAATTCGATTGTACTATTTGTAATAAACATTATGCTTCCGCATCGGGTTTGCGAAGACATAACTTGAAAAATCACAACGAAACCGGCGTAGATACTTCCGTACTTTGCGATATTTGCGGTAAACAATTGTCCAGTAGGGAAAAACTGAAATTCCATCATCGCACTCATACGGGTTATAAACCGTATGGATGCCAAACGTGCcctaaacatttttcaaaaaaggaaCAACTCATCGAACACACCAGAGTACATACGGGCGAAAAGCCGTACGTGTGTAAATATTGTGCGAAAGCATTTACCCAAAGAACTCCTCTAAGAATTCACGAGAGAACGCATACCGGCGAAAGACCAAATATTTGTCCTATATGTAGTAAAGGTTTCATTTCGAAAACCGCCTTGGAAAGCCACATCAGAAGTTGTTGTAACAATTCACAAATTTTAATACCTGAAACTATGCCGTTGCCTTACCATTCTTTCTATACTACAAACTCTATAACTCCGATGACTCCCGGTTCAGAGGTTTCGGAACTGGAACataaattttcactttctgATGCTTTTCTTGATCCCCGACAACACGTCGATGTCATAGGTCACATAACTCCCATGTAG
Protein Sequence
MYGRIIRKKRSSKKHLNKIEQKKRKPSILPVKLEIPLSCSQCNTDFYTNVEYALHSINHSKDEKYSCHFCEYTNNSKYRLEAHVRAHEGSSKYKCEICNKPFNISTHAKEHKYFHTGEKPFQCEICGGHFMFSRILTKHRRSAHYEVIFGKPLAKYDCKICNKHYESLPGLQRHMYSNHNDNGADWSVICDICGKKIASKEKLKYHLRTHTGDRPFACVSCPRRFPKKDQLKEHERVHTGEKPFTCTYCGKNFGHRAPFRYHIKTHTGEKPYNCPICGKGFISKAAQSGHALTCIKKVNIVPEIKLEYDFDSETEWIPKEEKMKKTKLFKKKLKKERKEMKEKLRKEKKLIKDGTEIKKPKKIGREKKEKKRKQRISEDHPPVGELDEPIICDVCEQTYKNNVAFALHSIVHSEDGKYHCHLCSYRNASKYHIEMHVRAHEGATKYKCEICNKAFTVSTHALEHKYFHTGEKPFQCEICGKHFMFSWFLASHRRTSHYEILTGSPLVKFDCTICNKHYASASGLRRHNLKNHNETGVDTSVLCDICGKQLSSREKLKFHHRTHTGYKPYGCQTCPKHFSKKEQLIEHTRVHTGEKPYVCKYCAKAFTQRTPLRIHERTHTGERPNICPICSKGFISKTALESHIRSCCNNSQILIPETMPLPYHSFYTTNSITPMTPGSEVSELEHKFSLSDAFLDPRQHVDVIGHITPM

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00437326; iTF_00911320;
90% Identity
-
80% Identity
-