g14082.t1
Basic Information
- Insect
- Diabrotica virgifera
- Gene Symbol
- -
- Assembly
- GCA_003013835.2
- Location
- ML015102.1:1130628-1148750[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.36 95 6.4 1.3 2 23 61 82 60 82 0.94 2 19 1.9 5.1e+02 4.1 2.4 1 23 88 110 88 110 0.96 3 19 0.096 25 8.2 3.3 1 23 116 138 116 138 0.91 4 19 0.026 6.9 10.0 2.4 1 23 144 167 144 167 0.98 5 19 0.00059 0.15 15.2 1.5 1 23 179 202 179 202 0.96 6 19 0.0001 0.026 17.6 0.3 3 23 213 233 211 233 0.97 7 19 0.00036 0.094 15.9 0.3 1 23 239 261 239 261 0.96 8 19 2.4e-05 0.0063 19.6 3.1 1 23 267 289 267 289 0.98 9 19 0.00045 0.12 15.6 0.0 1 20 295 314 295 316 0.92 10 19 0.013 3.5 10.9 0.0 3 23 425 445 423 445 0.93 11 19 1.6 4.1e+02 4.4 5.9 1 23 451 473 451 473 0.97 12 19 0.0081 2.1 11.6 2.2 1 23 479 501 479 501 0.90 13 19 0.00017 0.044 16.9 2.5 1 23 507 530 507 530 0.98 14 19 0.00029 0.075 16.2 1.7 1 23 542 565 542 565 0.94 15 19 0.04 11 9.4 3.0 3 23 576 596 575 596 0.99 16 19 0.00013 0.033 17.3 1.7 3 23 604 624 602 624 0.97 17 19 7.5e-07 0.00019 24.3 0.8 1 23 630 652 630 652 0.99 18 19 0.00021 0.055 16.6 0.0 3 22 660 679 659 679 0.95 19 19 5 1.3e+03 2.8 0.0 8 22 749 763 749 763 0.91
Sequence Information
- Coding Sequence
- ATGCTTCTTTTAATCTGTCCTTGTCTATTCCCACAAGAACTATGTCATGTCAACTTCATTTTTTTTAGGAAATCCCGGAAAAAGCGGAAAAACTCCCAGAAGCCCAACAATAAATTGAATTCCAACAAAATAAGTCGCAAGAGATCGTCAGTACTTCCAGTGAAGCTAGAAATACCTTTATCCTGCTCAAATTGCGACCTCAAGTTCCACACTAACATAGACTACGCTCTACATTCCATAAAACACAGTACCGATAATAAGTACTCGTGCCATTTCTGCGATTACACCAACATCTCGAAGTACCGAACAGAGGCCCATGTACGGGTGCACGAAGGGTCGTGCAAGTACCGATGTGATATTTGCCACAAGCCGTTTAATATTAGTACCCACGCGATTGAGCACAAGTACTATCACACTGGAGAGAAGCCCTTTCAATGTGAGATATGCGGGAACCATTTTATGTTTTCCAGGATTTTGACTAAGCACAGGAGGTCGGCGCACTATGAGGTTTTGTTTGGGAAGCCTTTAGCCAAGTACGATTGCAAGGTATGCAACAAACATTACGAATCACTCCCGGGCCTGCAGCGTCACATGTACAGCCAGCACAACGATTCTGGGGAGGATTGGTCCGTCATTTGTGACATTTGTGGTAAAAAAATCGCTTCAAAGGAAAAACTGAAGTACCATTTACGAACCCACACAGGAGACAGGCCTTTCGCATGTGTTTCCTGTCCGAGAAGATTCCCCAAGAAGGACCAGCTCAAGGAACACGAGAGAGTTCATACCGGGGAGAAACCCTTTAATTGTACTTATTGTGGGAAGAGTTTTGCACATAGGGCTCCGTTTAGGTACCATATCAAAACGCACACCGGAGAGAGACCCTATAGTTGTCCCATTTGTGGAAAGGGGTTCATTTCGAAGGCTGCACTATCTGGACATGCCTTAGTTTGTTCAAAAAAAGTAACAACCAAGCCAGACGAAGCAAAATGTGAAATGGAAGAGTACGACTTCGAATCCGAAACTGAGTGGAtcccagaagaagaaaaactaaagaaaagcaAATTACTAAAAGAAAAACTGAGAAGAGAACGAAAAGAACTTAAAGAGAAGTTAAAGAAAGAGAAGAGAATCACAAAAGACGGAACAAAAATCAAAAAGTTGAAGAaagaaaagaaggagaagaaagaGAAGAGagagaagaaggagaagaaacgcaaaaaacggaacACGGACAATCATCCACCGCCTGCTGAACTAGACGAGCCTATTATATGTGACATATGTGAccaaacttataaaaataatgttgCCTTTGCCTTACATTCCATTGTTCATAGCGAAGATGGTAAATATCACTGCCATTTGTGCTCTTATCGAAACGCTTCAAAGTACCATCTCGAGATGCACGTGCGTGCTCACGAGGGAGCCACCAAATACAAATGTGAGATTTGTAACAAAGCTTTCACAGTTAGCACGCATGCGCTAGAGCATAAGTATTTTCACACAGGGGAAAAAccatttcaatgtgaaatatgtGGTAAGCATTTCATGTTCTCGTGGTTTTTGGCTTCACATAGACGCACTTCACATTACGAAATTCTCACAGGCAGCCCTTTGGTCAAATTCGACTGTACTATTTGTAATAAGCACTATGCTTCAGCTTCAGGCCTCAGACGGCATAACCTTAAAAATCACAACGAAACAGGCGTAGATCTTTCTGTCCTTTGCGATATATGTGGAAAACAGTTATCCAGTAGGGAGAAACTTAAGTTTCACCATCGTACACACACAGGTTACAAACCGTATGGTTGCCAAACCTGCCccaaacatttttctaaaaaagaGCAGCTTATTGAGCACACTAGGGTCCATACGGGAGAAAAGCCTTACGTTTGTAAATACTGTGGTAAAGCCTTTACTCAAAGAACTCCCCTAAGAATCCACGAAAGAACACACACAGGAGAGCGACCAAATATTTGCCCGATTTGCAGCAAAGGATTCATTTCCAAAACTGCTCTGGAAAGCCATATTAGGAGTTGTTACAACAACTCGCAGATTATTATACCAGAGCTCGTGCAATTGCCGTATCATTCGTTTTATGGATCAAACTCTACTCCTATGACTCCGATGACTCCTATGACCCCTTCTTCGGAAGTTTCGGAGTTGGAGCATAAGTTTTCTCTTTCAGATGCTTTTCTTGATCCTCGACAACATATCGATGTAATTGGACACATGACTCCCATCAAAGGGTTCATTTCCAAAACTGCTCTGGAAAGCCATATTAGGAGTTGTTACAACAACTCGCAGATTATTATACCAGAGCTCGTGCAATTGCCGTATCATTCGTTTTATGGATCAAACTCTATTCCTATGACTCCGATGACTCCTATGACCCCTTCTTCGGAAGTTTCGGAGTTGGAACATAAGTTTTCTCTTTCAGATGCTTTTCTTGATCCTCGACAACATGTCGATGTGATTGGACACATGACTCCCATGTAA
- Protein Sequence
- MLLLICPCLFPQELCHVNFIFFRKSRKKRKNSQKPNNKLNSNKISRKRSSVLPVKLEIPLSCSNCDLKFHTNIDYALHSIKHSTDNKYSCHFCDYTNISKYRTEAHVRVHEGSCKYRCDICHKPFNISTHAIEHKYYHTGEKPFQCEICGNHFMFSRILTKHRRSAHYEVLFGKPLAKYDCKVCNKHYESLPGLQRHMYSQHNDSGEDWSVICDICGKKIASKEKLKYHLRTHTGDRPFACVSCPRRFPKKDQLKEHERVHTGEKPFNCTYCGKSFAHRAPFRYHIKTHTGERPYSCPICGKGFISKAALSGHALVCSKKVTTKPDEAKCEMEEYDFESETEWIPEEEKLKKSKLLKEKLRRERKELKEKLKKEKRITKDGTKIKKLKKEKKEKKEKREKKEKKRKKRNTDNHPPPAELDEPIICDICDQTYKNNVAFALHSIVHSEDGKYHCHLCSYRNASKYHLEMHVRAHEGATKYKCEICNKAFTVSTHALEHKYFHTGEKPFQCEICGKHFMFSWFLASHRRTSHYEILTGSPLVKFDCTICNKHYASASGLRRHNLKNHNETGVDLSVLCDICGKQLSSREKLKFHHRTHTGYKPYGCQTCPKHFSKKEQLIEHTRVHTGEKPYVCKYCGKAFTQRTPLRIHERTHTGERPNICPICSKGFISKTALESHIRSCYNNSQIIIPELVQLPYHSFYGSNSTPMTPMTPMTPSSEVSELEHKFSLSDAFLDPRQHIDVIGHMTPIKGFISKTALESHIRSCYNNSQIIIPELVQLPYHSFYGSNSIPMTPMTPMTPSSEVSELEHKFSLSDAFLDPRQHVDVIGHMTPM*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00459171;
- 90% Identity
- -
- 80% Identity
- -