Basic Information

Insect: Diorhabda carinata
Gene Symbol: -
Assembly: GCA_029229535.1
Location: CM055255.1:996313-1000128[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 0.021 1.9 9.6 1.4 1 23 117 139 117 139 0.98

2 16 1.2 1.1e+02 4.1 2.1 2 23 145 166 145 166 0.91

3 16 0.00089 0.082 13.9 8.3 1 21 172 192 172 194 0.95

4 16 2e-06 0.00019 22.2 1.3 1 23 200 222 200 222 0.97

5 16 0.32 29 5.9 4.0 1 23 230 252 230 252 0.97

6 16 6.4e-05 0.0058 17.5 0.3 2 23 259 280 258 280 0.97

7 16 0.001 0.093 13.7 0.4 1 23 285 308 285 308 0.97

8 16 0.002 0.18 12.8 7.1 2 23 312 333 311 333 0.96

9 16 2.4e-05 0.0022 18.8 1.0 1 23 339 362 339 362 0.96

10 16 6.3e-07 5.8e-05 23.8 0.4 2 23 370 391 370 391 0.98

11 16 4.3e-08 4e-06 27.5 1.6 1 23 395 417 395 417 0.99

12 16 1.7e-05 0.0016 19.3 1.0 1 23 423 445 423 445 0.99

13 16 0.00044 0.04 14.9 2.4 1 23 451 473 451 473 0.97

14 16 6.7e-05 0.0061 17.4 1.7 1 23 479 501 479 501 0.98

15 16 0.00022 0.02 15.8 4.6 1 23 507 531 507 531 0.92

16 16 0.004 0.36 11.9 0.8 1 21 542 562 542 565 0.87

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	0.021	1.9	9.6	1.4	1	23	117	139	117	139	0.98
2	16	1.2	1.1e+02	4.1	2.1	2	23	145	166	145	166	0.91
3	16	0.00089	0.082	13.9	8.3	1	21	172	192	172	194	0.95
4	16	2e-06	0.00019	22.2	1.3	1	23	200	222	200	222	0.97
5	16	0.32	29	5.9	4.0	1	23	230	252	230	252	0.97
6	16	6.4e-05	0.0058	17.5	0.3	2	23	259	280	258	280	0.97
7	16	0.001	0.093	13.7	0.4	1	23	285	308	285	308	0.97
8	16	0.002	0.18	12.8	7.1	2	23	312	333	311	333	0.96
9	16	2.4e-05	0.0022	18.8	1.0	1	23	339	362	339	362	0.96
10	16	6.3e-07	5.8e-05	23.8	0.4	2	23	370	391	370	391	0.98
11	16	4.3e-08	4e-06	27.5	1.6	1	23	395	417	395	417	0.99
12	16	1.7e-05	0.0016	19.3	1.0	1	23	423	445	423	445	0.99
13	16	0.00044	0.04	14.9	2.4	1	23	451	473	451	473	0.97
14	16	6.7e-05	0.0061	17.4	1.7	1	23	479	501	479	501	0.98
15	16	0.00022	0.02	15.8	4.6	1	23	507	531	507	531	0.92
16	16	0.004	0.36	11.9	0.8	1	21	542	562	542	565	0.87

Sequence Information

Coding Sequence: atgatgccgatagaaataaaattggaatCAAATGACGAACAAGAACAAGTAAAAGTTAAAATAGAACCTGTAACTGAAAATGACCTAAAAACAGATAATTCAAGTGTTGATTTACCGGAAGAACTATGTCCACAAGTTAAAATAGAACCATCGGCGTGTTCCTCAAgcgaaaaagtgataaaaactgaaataaagtCGGAATTATACGGGGATATCGATATTAAGCAATATAACTTGGATGTATCTGATAATATCGTAGATATTCACGAAGAAAACTTGAATATATCGTTTGAAGAATTGAATGCATTAAACGACGATTTTACTATAATTGAAAACGAAACGACTGTGTACAAGTGTCAAATATGTGGAGACATTTTCATCAAGTATCAAGAATACAGATTACATAAAAAGAATCATTATATAGAAAAGAGAAGATGCCACATTTGCCATAAAGTTCAACAGAGTCTCGGTGTGCTAGAAGAACATGTTAACAAGCATCTGGGTCTCAAACCGTACAAATGTGAAGAATGTGACAAATGTTTTGCTTCAAAGAACCATCTTAGTTTACACAAAAGATGCCATAATACTAGCGAAATTTATAAATGCGCGAAATGCGGAAAGGAATTTAGAACTAGTGCTTCGTTACGTAGTCACCGTTTTGTGCATTATGAGAAGATAATTGAAGATTTTAAATGCAAGGTTTGCGGTCACAGTTCAGTCGACGAAACCAAGCACAAACTCCACATGTCGATGCACGCGAAAAAAGCCGAAATTAAATGTGGATTATGTAACAAAGCTTTCAATACCGAACGTGGTTTAGAGAGTCATTTAAGTACTCACAATGAATTACAATTTCCGTGTGAATTTTGCGGTAAAATATATCCTTCGATGTACAGGATCAAGAGGCATATTAAAAGAGCTCATGCGCCTTGCAAGTGCGAACATTGCGGTCAGGTATTTCATGATCGTTTTCTTTATAATAAGCATATTAAAGAACACAGCCAGCAAACCAAATACGAATGTGAATACTGCCAGAAAGTTTTCGAAAAAGCCAAAAACTTATCGGAACATTTCCGTCTTCAGCACAAACAAGACGACGAGAAAAGAAAGTGCCCCATTTGCGAAAAGGAATTCATCAATAAGGCATTATTGAGAAACCACATTAAAACTCACGATAAATGCTTCAAATGTAAAGTTTGCGATAAAGTTTTCTCATCCAgaTATAATTTGGAAATACATACAAACACACATTCCGGCGCTAAGAATTTCAAGTGcgatatttgtaataattattttgctaGCAAAACTAGTCTCAAAAATCACATCGCTACCCATTCCGAAGAAAGGAAGTTTCAGTGCGAGATTTGCGCTAAAACATTCAAAACTTCGAGAAGATTATACACTCACAGCCAAAGTCATGCTACAGAAGAAAAATATCAGTGCGAAATTTGTCTTCAGAAATTTAGagtTAAACAGTACCTCAAAGCTCACATGTACAGACATTCCAAAGTAAAACCGTTTTCGTGCGATGTTTGCCAAAAACGATTCAAACATAAAAAGACTAAAGAAAAACATATGCGTATAGGAAAACATCAACAAAAAGTTCCGGAAGGACAAGAAGAACACGATTGCGATTTTTGTGACGAAACTTTTTCGAGTAGAGACTTTTTACTCGATCATTTCGCCGCAGTTCATCATAACGAAAACGTAATCAACGAATGCGGTACAGAAGAAACTGACACTAAAGAATTAAATCACGTCGATGGCGATAATGGCGATGAGGTTATGAAAACGGAAACAGACGCTGTGGTATTTTAA
Protein Sequence: MMPIEIKLESNDEQEQVKVKIEPVTENDLKTDNSSVDLPEELCPQVKIEPSACSSSEKVIKTEIKSELYGDIDIKQYNLDVSDNIVDIHEENLNISFEELNALNDDFTIIENETTVYKCQICGDIFIKYQEYRLHKKNHYIEKRRCHICHKVQQSLGVLEEHVNKHLGLKPYKCEECDKCFASKNHLSLHKRCHNTSEIYKCAKCGKEFRTSASLRSHRFVHYEKIIEDFKCKVCGHSSVDETKHKLHMSMHAKKAEIKCGLCNKAFNTERGLESHLSTHNELQFPCEFCGKIYPSMYRIKRHIKRAHAPCKCEHCGQVFHDRFLYNKHIKEHSQQTKYECEYCQKVFEKAKNLSEHFRLQHKQDDEKRKCPICEKEFINKALLRNHIKTHDKCFKCKVCDKVFSSRYNLEIHTNTHSGAKNFKCDICNNYFASKTSLKNHIATHSEERKFQCEICAKTFKTSRRLYTHSQSHATEEKYQCEICLQKFRVKQYLKAHMYRHSKVKPFSCDVCQKRFKHKKTKEKHMRIGKHQQKVPEGQEEHDCDFCDETFSSRDFLLDHFAAVHHNENVINECGTEETDTKELNHVDGDNGDEVMKTETDAVVF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00736022;
90% Identity: -
80% Identity: -