Dvan007458.1
Basic Information
- Insect
- Dione vanillae
- Gene Symbol
- -
- Assembly
- GCA_037178615.1
- Location
- JAZFAU010000094.1:124817-132570[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 1.3 1.4e+02 4.2 1.9 3 22 446 465 444 468 0.90 2 12 2.1 2.3e+02 3.6 1.7 2 19 490 507 489 513 0.92 3 12 0.00034 0.038 15.4 3.1 1 23 527 550 527 550 0.97 4 12 0.0018 0.2 13.2 0.9 1 23 555 579 555 579 0.92 5 12 0.0003 0.033 15.6 0.1 2 21 630 649 629 650 0.96 6 12 0.00018 0.02 16.3 1.1 1 23 707 728 707 728 0.98 7 12 0.00029 0.033 15.7 1.4 1 23 734 757 734 757 0.90 8 12 0.00073 0.081 14.4 0.6 2 19 781 798 780 800 0.94 9 12 0.0047 0.52 11.9 0.3 2 23 808 831 808 831 0.96 10 12 0.046 5.1 8.7 3.5 1 20 838 857 838 860 0.95 11 12 0.0029 0.32 12.5 1.5 1 21 866 886 866 891 0.92 12 12 0.059 6.5 8.4 1.0 1 23 897 920 897 920 0.97
Sequence Information
- Coding Sequence
- ATGCTGTCGCCCCACGATGAGGACGATGACAGCCATCTTTGCATCAAGTGCAATGCGACTATCATTGGCCTCGATAATTATGTCAAACACAGGAAGCAAGCATGCGGCAAGAGAAAGAGTGAAGGCAAAAGTGAACTGCCTCCTATACATCCTTTAGAACCAACGTATAGTCTTGGTGCAGATGTGTTCTTTCAATCTTTGGAATTGCAAAGTAGTGTTAAAAAATCCTCTCTATCACGTTTGACACCACCTACTCCTATATCCAAAGCAAATTTAGCCTCCATAGAAAAGAAAAGCGCCCTGACTGTCTCTTCGACGTCACATCTTCCGCGTATGAGtcctatagaaaataatttaagaggAGAAGACTGGATCGGTGGACACAGTTTAAGGATAGGTAGCAATGAAGAtaatcaaacaaaattaattaacgcGGTCGCAAGTATAAGTGGTTCTGTAAAGAAAGACCTTCCTAGTACATCCTACAACATTGAAACGTTTAACGATTTTAAAGGAGACGAGGATTCGGAAGAATCTGAAGAttctgatgatgatgatgaagaagATGAAGTGCCACTTGGAGCAAAATGGAAACCACCACCAAGTCATACAGGAGGAAAGTGGCGACCTGCATCTCCGGAACGTGATGAGTGGGAAGAACAAGATCAACTAGATCGTGACTATGATTATGACGCCCCACCCCCCGGACATACTAAAGGTAAATGGGTTCCGGGAGCTAACGAGAAAACACAAATAATGCAGACTACAATTCAATCAAAGGGATCTGTGCAGTATTGGTGTGGGCCCTGCAATCGACGACTAGGTTCAAGAGCTATTTATGATAAGCATCTCATGTCTAATTTACATATGCGAAAGGTTCTTCCAGAACACGAGTTAGAGTTTTCAGGGCATTTAGAGCCCATAAGGAACATAACTGAGAAAAGAGCGGCACGCCCTAACTTGTTTGTAAACGAATCAGTTCCACAAACACCTCGAAAAAGACAAAAGGTAgaacctaaaataaatataaaggttaagaaaaagaaaaggaaaaggAGATCTTATTTCATTCAATGTGCAGGTTGCAAGACACGTGTTCGAACTCATCTGATAGGGAAACATCTAATATCCCACTACCATTTTAGGAAAGCTACTGATATTAAAAATGACGTTTACCAACAATTTATTCTGGATAATATGGAGGCTATAGTCCACCAAGCACCATTCCAATGTAGTCCATGCAAATTTTATACTAATCTGCTTCCAAACTTCCTGCAGCATTGGTTTTCTGAAGAACACGAACGTATCACGTCTTCAATGGATGGAAGGTACTGGTGTTCCTTTTGTAAAACTGAATGTGAGACCTCTCGGGATATGCTAAATCATATGTCGAGTTCTGAGCATCGTGAGGTTGTGGCTGTAATAAATAGATCCATGCCAATTATTATCCGTAAGAAGACAGTATTACGTTGCGGGACGTGTCAACAAGATTTTAGATATAACATAGAGATCAAACGACACTGTTTAAAAACTGGTCACGATTGTGCGCATACAGCCACAGATAACTATCAAGAAATGCATCGATgccaatattgtaaaattaaattcaaatcatCGGTTACTTTAGCGGCACATTTGAAATCTAAACACAAACAAAAAGCATTCTTCTGTCTCGTATGCTCGAAAACTTTCGCTTCTTCTGAAGAAGCTAAACGTCATCGACAAACGTCAGAGCACAGAATTAGAAGGAAAGAAATACTTCACGAAAGAGGAAGCATTACCAAAGACCTAAGTAAGAAATGTCCTTACTGTACAGAGAAGGTTGTGATGAAGAATATTCTCGAGCTAAAAGAACACATACGAAGAATACATCCCGATATTAGGAAGAAgtGTCCAAAATGCGGGAAAGCCTTCATATTCCCACAAGAAGTCTCCCGCCACATTCGAGACAACGCGTGTCAATTACAAAAAAACACATCTATCCATTCATCTATACTGTGGAACTGCAGCCAATGTCTCTTCACCACAGACTCGCAGGCAGAATGTTTTTTCCACGAGGTTCTACATACAGATGCTGTTGAAGAACAAATAAGTGGGAAATCTAAAgctgtacaaaaatattcttgCCCAATATGCTCTAAAAACTTTAAGAAAGCTTCACTAAGACTTCATTTAAGGCAGCATACGTTTGAAAGACCCTTCGTTTGTTCTACATGTGGGGCTAATTTCACAAGGCAGTCCAGTTTGGCCAACCATTGTAAGGTGGAACATGGCGACATGAATAGACCTAAACTGACGTCGATTGATGTGGCTCTCATTAAAATGACGGAGGAGACGCTGAAATGTAGCAAATGTAAGAAGACATTTAGCGACAGtaaCACTTTAGCTGAACACTCAGCGAATTGTGCTTCTGACGAGAGAAGGTGCCCATATGAGCAGTGTTCCTACATTGCATCTAGTGCTGCACAACTtaatagaCATCGTCGTACGCACGgtgataaaataaagaattacgAATGTCCATCTTGCGACTTCAAAACGGAACAGGCGAGCCACATGAAGCGACACCTGCTGTGTCATAAAGGAGTCAAGCCGTACGCTTGCCCTCATTGCCCTTTCACTTGCGGCAGTTTGgaGAATCTCCGTAAGCACGTTCTTCGTAGTGGCCGCCACCAGGGTCTTTATCTCTATACATGTACCACATGCCCTTTCCAAACTAACTTGGCGACTCAACTCCGCTCACACTACACGACCGCGCATCAGGATAAGTACGACGCGAAATCTGCTTTGGAAGCTGTCAAACGCCACTTAATGAAGGAttgttaa
- Protein Sequence
- MLSPHDEDDDSHLCIKCNATIIGLDNYVKHRKQACGKRKSEGKSELPPIHPLEPTYSLGADVFFQSLELQSSVKKSSLSRLTPPTPISKANLASIEKKSALTVSSTSHLPRMSPIENNLRGEDWIGGHSLRIGSNEDNQTKLINAVASISGSVKKDLPSTSYNIETFNDFKGDEDSEESEDSDDDDEEDEVPLGAKWKPPPSHTGGKWRPASPERDEWEEQDQLDRDYDYDAPPPGHTKGKWVPGANEKTQIMQTTIQSKGSVQYWCGPCNRRLGSRAIYDKHLMSNLHMRKVLPEHELEFSGHLEPIRNITEKRAARPNLFVNESVPQTPRKRQKVEPKINIKVKKKKRKRRSYFIQCAGCKTRVRTHLIGKHLISHYHFRKATDIKNDVYQQFILDNMEAIVHQAPFQCSPCKFYTNLLPNFLQHWFSEEHERITSSMDGRYWCSFCKTECETSRDMLNHMSSSEHREVVAVINRSMPIIIRKKTVLRCGTCQQDFRYNIEIKRHCLKTGHDCAHTATDNYQEMHRCQYCKIKFKSSVTLAAHLKSKHKQKAFFCLVCSKTFASSEEAKRHRQTSEHRIRRKEILHERGSITKDLSKKCPYCTEKVVMKNILELKEHIRRIHPDIRKKCPKCGKAFIFPQEVSRHIRDNACQLQKNTSIHSSILWNCSQCLFTTDSQAECFFHEVLHTDAVEEQISGKSKAVQKYSCPICSKNFKKASLRLHLRQHTFERPFVCSTCGANFTRQSSLANHCKVEHGDMNRPKLTSIDVALIKMTEETLKCSKCKKTFSDSNTLAEHSANCASDERRCPYEQCSYIASSAAQLNRHRRTHGDKIKNYECPSCDFKTEQASHMKRHLLCHKGVKPYACPHCPFTCGSLENLRKHVLRSGRHQGLYLYTCTTCPFQTNLATQLRSHYTTAHQDKYDAKSALEAVKRHLMKDC
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00214005;
- 90% Identity
- iTF_00783014;
- 80% Identity
- -