Dvan023529.1
Basic Information
- Insect
- Dione vanillae
- Gene Symbol
- -
- Assembly
- GCA_037178615.1
- Location
- JAZFAU010000318.1:2522550-2529524[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 2.3 2.5e+02 3.4 1.7 1 23 243 269 243 269 0.82 2 17 0.0038 0.42 12.2 0.0 2 23 297 319 296 319 0.95 3 17 0.0042 0.46 12.0 4.1 2 23 340 361 339 361 0.97 4 17 0.27 30 6.3 0.2 1 23 365 387 365 387 0.97 5 17 0.015 1.7 10.3 0.8 1 23 392 415 392 415 0.82 6 17 0.019 2.1 9.9 0.5 2 23 452 474 451 474 0.96 7 17 0.00083 0.092 14.2 3.0 1 23 480 502 480 502 0.98 8 17 1.4 1.6e+02 4.1 0.0 1 12 508 519 508 522 0.91 9 17 8 8.9e+02 1.7 0.0 10 23 615 629 612 629 0.86 10 17 2.2 2.4e+02 3.5 0.0 2 23 653 675 652 675 0.86 11 17 0.0029 0.32 12.5 0.6 2 23 698 720 697 720 0.95 12 17 5.6e-05 0.0063 17.9 0.5 1 23 724 746 724 746 0.95 13 17 0.0036 0.4 12.2 0.6 1 23 751 774 751 774 0.95 14 17 0.048 5.3 8.7 1.2 1 22 781 802 781 804 0.81 15 17 9.1e-05 0.01 17.3 1.4 1 23 811 834 811 834 0.96 16 17 0.13 15 7.3 0.7 1 23 840 863 840 863 0.95 17 17 3.6 4e+02 2.8 0.4 11 23 878 891 875 891 0.87
Sequence Information
- Coding Sequence
- atgaacGAGgacaataatataatgatttctGAATATTTGTGTAGATGCAAATGTTGTTTGAatgacaaagaattgaaaagcTTGTGGGACGTGCATGAGAGTGATGGCGGTGACGAAATTTATGGGAATATGTTAGTCGAGTGTTTTACGTTACCGtggGTTCCATCTGATGAACCAGAACATATTTGTGAGATATGTATATTGAAACTCCGAGAAGCACttgattttaaaagaaacatattagCTATTGAAGATGTTCTATTAAATGGAATTGATATAAAAGATGAAATAGACACTCAATCTGACATAGCATCTAACACAACACTAGTCAAATATGTTCCAGAACAGCCCCAATTGAAAGTCTTAACAGAACTAGCTACTACAAGTTCAGGTCCCTCGACTCCAGGTGCCTCGAGCTCAGGGCCTCCCAGCCCATTGAGAAAATGGccgaaaaagaagaaaaaacatGAATTAACAAAATTCTACAAACAATATACTAAAGAAGATTTAGCAGAAGCTATAAGAGTAGTTAGAAACGGTGAGATGAGTTGTGCAAACGCAGCCGTTAGGTATGGCGTCCCGAAGAAAACGTTAACTGTCAAAGTTAACTCGTTTAGTGATGGGGACGGCGATGAATCCAGTAATAAGCATTACAAATTAATAGAAGAAATTAAACTCCTTCTAACGCACACTACTGCCGTGCCTTTCAAAACTAAAACAACAAGATATTACTGTTTCTACTGTTCCACCGAAGGCCCCTACTTTGAAGACACAGACGAGCTAAGGGAACATACAAGAACTAATCATGAACACGAATGGACCAAAATAGAATTGTATATGAGACCGCAATGGTTGAATGAAGTTATTAAAATGGATGTACAggatatatattgtaaaatatgtcaAACAATGTTACCAGATTGGAATAATCTATTTGTACATTTGGCAATGGAACACAATCTGGAATTTGATATGGCGTACACGAAAATAATTCCATACGGTTTAAGTTCtaatttaaaatgctttttgTGTGGGCAGAGTTTTCACAATTTTGGACATTTGGACAGCCATATGAACAATcactatagtaattatatatgttacgaGTGTGGCGACACGTTTCTTTCGGCAAGTCGCTTGGACAAACACTTGAGTGtacataaaataggcaactacCCGTGTGAATATTGTGATAAAGTGTTCAAGTTAGACAAATATAGATCGAAACATGTCAGCTTAGTTCATATTCAAGAAAATACAGTGAAGTGCTTGTACTGTCCGGAGAAGTTCCTTGGTATATTTCAGAGGCATATACATGTGACTGAGAAACATAAAGATAAGGTCAAATATATGACTTGTGAGTACTGTGGCAATAGTTATACGTGGAAACCTTATTTTCTGGCGCATATGAAGAGAAGGCATGGATCGGAGAAGAAGTATAAATGCAAATTTTGTGAAAAGAGCTTCTTGATGAAGTACGAATTGAAGAATCATATGGTGAGGCATACAGGGGAAAAGAACTTTGTGTGTGGCTTGTGTGGGTTAGGATTTACTAGGATGTGGGACCAGCCTTCAAATGATGATAACTCAGAGCATATATGTGAGAAATGTATAACAAGATTGCACAATGCCGTTGATTTCAAAAAAGAGATTTTACTCTCTCAGCAGTTGTTATCTCAACAATTAAGATGTGAATCTCTTGATGAGGTAAAGCAAGAGGAAGAATCTGACACAGATATAGAAACTGAATATCTAAGCATAGAATGTTTTGAAGATGATGACAACGGAAGAGAGAGGAAAGACAAagAATTGGATATTCTTGCCATTTCTGCTACTGAGGAATATGAGAAGCCAAGTGATTTAAAAACACACACAATAAAAACACACTTCACCAAAAGTGTAATGCAAGTGACAGTGTTACCAGATACAAACGTAAAATTGGACATCACTGGACTAAAGTGTAAAATTTGTGATATCAACATTGATACACTTGAAAGTGTTTTGTTACACTTGAGTGAAGTGCATAGTGAAAAAATACATACTAAAACACCTAATTACCTAATACCATTCAAATTTGATAGTGAACTATTAAAATGTGCCGTGTGTCGTGAAGAGTTTAAGAGTTTCAAGCTTTTAAATGACCATATGAATTTGAATCATTATACAAATTATGCGTGTCCGAAATGCGGGCGCGGATTCATAAACAAGAGGTCTTTAATAACACATAGCTATAGGCACGAGACCGGCATGTTTTCGTGTCAATTTTGCCCAAAAGTGTTTTCCAATCGTGTCAGAAAAATCGCCCACGAGCGTTCAGTGCATTTGTTTAATAGCAAACGCCATAAATGCGGTTACTGTGGAGAGAGATTCACAGATGTCGTTAAGAAAAAAGATCATGAAGTTAAAATTCATAACGCGCCAAAACCGATATACACCTGTCAAGCGTGTggcaaaaattacaaaagtcaAAGATCCCTTCGAACTCATGTACGTGGATATCATTTAATGCAGCGGCCATATAAATGCAACGAATGCGAATTTAGTGcattcaaaaatattgaattgaaaatgCACTATGATAAAGCACACCGGGTTCTAAAGATTTTAGTTGTTATATATGCACAAAGTCGTACGGACAAGTGTAGTTGGAAGACGCATATGCGGACGAAGCATGGTGAAAGTGTTTAG
- Protein Sequence
- MNEDNNIMISEYLCRCKCCLNDKELKSLWDVHESDGGDEIYGNMLVECFTLPWVPSDEPEHICEICILKLREALDFKRNILAIEDVLLNGIDIKDEIDTQSDIASNTTLVKYVPEQPQLKVLTELATTSSGPSTPGASSSGPPSPLRKWPKKKKKHELTKFYKQYTKEDLAEAIRVVRNGEMSCANAAVRYGVPKKTLTVKVNSFSDGDGDESSNKHYKLIEEIKLLLTHTTAVPFKTKTTRYYCFYCSTEGPYFEDTDELREHTRTNHEHEWTKIELYMRPQWLNEVIKMDVQDIYCKICQTMLPDWNNLFVHLAMEHNLEFDMAYTKIIPYGLSSNLKCFLCGQSFHNFGHLDSHMNNHYSNYICYECGDTFLSASRLDKHLSVHKIGNYPCEYCDKVFKLDKYRSKHVSLVHIQENTVKCLYCPEKFLGIFQRHIHVTEKHKDKVKYMTCEYCGNSYTWKPYFLAHMKRRHGSEKKYKCKFCEKSFLMKYELKNHMVRHTGEKNFVCGLCGLGFTRMWDQPSNDDNSEHICEKCITRLHNAVDFKKEILLSQQLLSQQLRCESLDEVKQEEESDTDIETEYLSIECFEDDDNGRERKDKELDILAISATEEYEKPSDLKTHTIKTHFTKSVMQVTVLPDTNVKLDITGLKCKICDINIDTLESVLLHLSEVHSEKIHTKTPNYLIPFKFDSELLKCAVCREEFKSFKLLNDHMNLNHYTNYACPKCGRGFINKRSLITHSYRHETGMFSCQFCPKVFSNRVRKIAHERSVHLFNSKRHKCGYCGERFTDVVKKKDHEVKIHNAPKPIYTCQACGKNYKSQRSLRTHVRGYHLMQRPYKCNECEFSAFKNIELKMHYDKAHRVLKILVVIYAQSRTDKCSWKTHMRTKHGESV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00457943;
- 90% Identity
- iTF_00457943;
- 80% Identity
- iTF_00457943;