Dgla079853.1
Basic Information
- Insect
- Diogma glabrata
- Gene Symbol
- -
- Assembly
- GCA_963693315.1
- Location
- OY856188.1:106641601-106692991[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 7 7.7e-05 4 10.1 0.3 21 51 86 116 78 118 0.89 2 7 0.00077 40 6.9 0.0 20 48 117 145 114 151 0.89 3 7 0.051 2.6e+03 1.1 0.2 27 48 193 214 189 217 0.77 4 7 3.4e-05 1.8 11.2 0.1 21 48 585 612 572 614 0.92 5 7 0.032 1.6e+03 1.7 0.2 23 46 653 676 646 681 0.89 6 7 0.00061 32 7.2 0.1 21 50 754 783 748 785 0.91 7 7 0.0014 75 6.0 0.1 21 48 905 932 901 936 0.93
Sequence Information
- Coding Sequence
- atgaaatcgGAACTGATCGAACAACATGAAGAGatatcacaaaataatattttggaattGAAAATCGAACCAAAACTAGAAGTAAATTTTGAATGTAATACACCGATTTCAAGTAATGATTGTCAACCAAATGTATTTGAATTTAAGAGCAGTAAAACTTCAACGGAGGAACGTCCATATGTCTGCACTTGGGAAAactgtaataaaaaattatcaacagCTAATGGATTTAAATATCATATGCAATCTCACAATGGAGAAAAACCTTGTAAATGTTCTATATGTGATCGATGTTTTCTATCGAAGAGTACCTTAAAACGTCATTTGACGGTGAAACATGGTTCAAAGAAAACAGAAACACCTTTCAAATGTCCTACGTGTAATCAATATTTTCGATGGGGAAATAGTttacaaaaacatattatattaGTACATGAAACACAGGAAAAGGTCaaaCCGGTAACACCTAAAAAACATCTTTATTCCTGTACGTGgaaaaattgcaataaaaaattaagtacAGCTTCTGGACTTAAATATCATATGCTAGCTCACaataataaaaatcgttttaaaTGTTCTTCATGTGATCAACACTTTCAATCATATCAGAGTTTAAAATATCATTTAGAGTTGAAACATGATCAACACGAAATAGACGAAACAACATCTAAAATTCATCGGTTTGTGTGTACTTGGGAAAACTGCAATAAAGGCTTTGGAACAAGAAATGGACTTGAATATCATATTGAAATTCACAATAATGAAAAACCCTTTGAGTGTTCTTCATGTGATATGTGTTTTCCTTCGGAAAATCTATTAAATCAACATACAAAGGAGAATCACGAATCACAGAAAGCAGATaaCAAAATCAAGATGTATAAATGTCGACATTGCGTTAAAAAGTTTCTGTATTATTCTACGCTGAAATATCATATGAGGCTTCACGCAGGCGAAAAACCATATAAGTGTTCCAAGtgtgataaaaaattttcgtttacATCTATTTTTAAACGTCATATAAAAAGTCATGGAACAGGAAAAATGAAGAAAATGCTAGCAAGCAGTTCTGAAAGAACCGCAAATGAAATACATAGACATGGACATTTAATAGATGAGCTTAAAAATCACTGCAAAGGCAAAGAAGGTGTGCAAAACAGTTTGGTGAATACAGTCCAAGCTGAACATATAAAATTAGGAAAAGATGAGGAAAGGAAATTTGAGGAATCCTCCTGTGATCTACGTCTTTTGGAAGCGGAGATCTCAATAGAATCTTCGGAGGCAGATCTCCATAACATACCACCGGTATACCACCGGCAACCTGTTGCTCTACAGAATAGCAAACCAACCGCAGCTGTAATAGAAGGTCTGGTAaaccgtgaaggtctaccagtTGATCGTGCACACAACACCAGCATTCACCCGCCGCTAGTTCAAGCTGGCATGGATTCTGGCGAACAACCATTTAACAAGAATATTTATACTAAACAAAATCGCATTCGCACATTTGCCACAAGCAGTGTTGGTACAGAAACAATAATGCACGACAAtttaatagataaaataaaaattgaaccTATTGATGTTGACGATGAAAGTTTGACGGAAACAACTAATGTCGATCATACAATTTCGGAACAAGATGAGGAAATGTCAACTACCAATCCATGTGTGTATGTCTGCGCTTGGAAAAATTGCAATAAAACAATAAGAACGCGTAAAGGATTTGAATATCATATGAGAGTTCACAATAAAGAAAAACCGTTTAAATGCTCAGCCTGTGACACCCATTTCCGATCGAAACAGAATTTAGAACGTCATGTGGACCTTACACATAATTTAATAGAAACGGATatgGCAAAAAAGTCGAAACGCAACTATAAGTGCGAAACATGTAGTATAACGTTTTTTAGCTATCATCATTTAAACAGTCATAGAAGGATTCATATAGTTAGAAAACCACATGAATGTTCACAATGTCATAAAGTATTCTCTCGGAAAGATTATTTAGACAGACATTTAAAAATGCATTTACGATGGGGAACCATGCCACTGCAAATAATAAAAGAAGAACCACCTATCATTCAAAGTTCCAATGAAATCCCGCAACAATTAGTTAAAAGTGAACACAGTAATCAAATTCCTCATGAAATCaaaacgtCAGCTACCAAACAACACTCCTTTGTCTGTACTTGGAAAAACTGCAATAAAAAGTTAAGAGCACGTAGAGGATTTCAAATTCATATGAGAGTTCACAATAACGAAAAACCGTTTAAATGTCCATCATGCGATCAACATTTCCGATCAAAAGAGAATGTAACAAGTCATATGAAGTTTAAACATAGTTTAAAAGAAGAAGATaatGATATCGCTGACGAAACATTTAATAAATTGGAAACTACAACACCGATGATTGAAGTTGAAAGTGACAATAAAGGTTCTGTAATATTAAAGAAGattaaaattgaaaacgaaCCCAAAACTGATGAACCAAAATATGAAATTCCGCATAAAACCGAGGTAGCCAATATTATTTTGGATAATATCAATAGGAGTGCATCAACTGCTGCGATTGAATTTAATACAAATGATTTAGAAgaGAAATCGACAAAAAACGTTGCTAAGAAAAAGGTACTTGTCTGTTCTTGGGGAGACTGCAATAAATCATTTACAAAAGCCGATGCATTAATGTACCACATGCGAGTTCATAAAGGAGAAAAACCTTACCATTGTTCAATGTGTGATAACAGTTTTCGggcaaaacattttttaactCAACATTTAAAACTAAATCATAATCCAGAGGCAACTGCCGAAAGTTCACTATCCAAATCTACTGATGCAGCAAATGAAACACCCGACGATATCATAAATGAAGTACAATCTGATTCCATAAATATTAAACGTGAGAAAGACGATTTGTTGGACACTACTATTACTgaaaatatacattttgtaaAAGAGGAGATTATATATGACGAAACAGCAACAAATGCTGGCAATTTATCGTATAAAAATTGTCCTAACGAATCAATTTGTAAAGAAGAATTATTTCTATTTGATTGA
- Protein Sequence
- MKSELIEQHEEISQNNILELKIEPKLEVNFECNTPISSNDCQPNVFEFKSSKTSTEERPYVCTWENCNKKLSTANGFKYHMQSHNGEKPCKCSICDRCFLSKSTLKRHLTVKHGSKKTETPFKCPTCNQYFRWGNSLQKHIILVHETQEKVKPVTPKKHLYSCTWKNCNKKLSTASGLKYHMLAHNNKNRFKCSSCDQHFQSYQSLKYHLELKHDQHEIDETTSKIHRFVCTWENCNKGFGTRNGLEYHIEIHNNEKPFECSSCDMCFPSENLLNQHTKENHESQKADNKIKMYKCRHCVKKFLYYSTLKYHMRLHAGEKPYKCSKCDKKFSFTSIFKRHIKSHGTGKMKKMLASSSERTANEIHRHGHLIDELKNHCKGKEGVQNSLVNTVQAEHIKLGKDEERKFEESSCDLRLLEAEISIESSEADLHNIPPVYHRQPVALQNSKPTAAVIEGLVNREGLPVDRAHNTSIHPPLVQAGMDSGEQPFNKNIYTKQNRIRTFATSSVGTETIMHDNLIDKIKIEPIDVDDESLTETTNVDHTISEQDEEMSTTNPCVYVCAWKNCNKTIRTRKGFEYHMRVHNKEKPFKCSACDTHFRSKQNLERHVDLTHNLIETDMAKKSKRNYKCETCSITFFSYHHLNSHRRIHIVRKPHECSQCHKVFSRKDYLDRHLKMHLRWGTMPLQIIKEEPPIIQSSNEIPQQLVKSEHSNQIPHEIKTSATKQHSFVCTWKNCNKKLRARRGFQIHMRVHNNEKPFKCPSCDQHFRSKENVTSHMKFKHSLKEEDNDIADETFNKLETTTPMIEVESDNKGSVILKKIKIENEPKTDEPKYEIPHKTEVANIILDNINRSASTAAIEFNTNDLEEKSTKNVAKKKVLVCSWGDCNKSFTKADALMYHMRVHKGEKPYHCSMCDNSFRAKHFLTQHLKLNHNPEATAESSLSKSTDAANETPDDIINEVQSDSINIKREKDDLLDTTITENIHFVKEEIIYDETATNAGNLSYKNCPNESICKEELFLFD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00456466;
- 90% Identity
- iTF_00456466;
- 80% Identity
- iTF_00456466;