Druf011166.1
Basic Information
- Insect
- Dioctria rufipes
- Gene Symbol
- -
- Assembly
- GCA_963924295.1
- Location
- OZ002740.1:31519598-31521432[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.00099 0.46 13.6 0.2 3 23 245 265 244 265 0.97 2 12 3.7e-06 0.0017 21.2 3.1 1 23 271 293 271 293 0.97 3 12 7.3e-05 0.034 17.2 2.1 1 23 299 321 299 321 0.98 4 12 2.1e-05 0.0099 18.8 1.3 1 23 327 349 327 349 0.98 5 12 0.00035 0.16 15.0 3.1 2 23 356 377 355 377 0.96 6 12 1.7e-05 0.0077 19.2 1.9 1 23 383 405 383 405 0.96 7 12 1.7e-06 0.00081 22.3 2.3 2 23 413 434 412 434 0.97 8 12 1.7e-06 0.00079 22.3 0.8 1 23 440 462 440 462 0.99 9 12 0.0051 2.4 11.4 1.1 1 23 471 493 471 493 0.98 10 12 0.0019 0.86 12.7 3.1 1 23 499 521 499 521 0.98 11 12 0.0001 0.047 16.7 1.2 1 23 527 549 527 549 0.97 12 12 0.097 45 7.3 0.3 1 23 555 577 555 577 0.93
Sequence Information
- Coding Sequence
- ATGGATGCCCTATGTCGCTGTTGCCTAACAGAACACCCAAATATACACAACATTTTCGAAGATGGAATACTGAAAAAACTTCGATTATGTTCAAATGCTACAATTTCAAAAGATGATAGTCTACCGAAAATAGTTTGCGAAAACTGCttagaaaaaatcgaaaattcttATGAATTTCGTGAAACTTGTGAAAGATCAGATTCCTTTTTTAGAGATTGGATAGAAAAGAATGACTTAAGAAAAGAAGAtgaatcggaaattgaaaaatcaaaAGATGACGAATGTGAGGGCAGCGAAACAGGAATATTAAAATCAACAGTTATTAGTGGTTTTTCTATGCAAAAAGAGGAGCATATCATAGATTTATATGAAACCGACTTCATAGAATGCTTAAGTACGGATAACAATGAGATGATCGATCTAAATGAGCAGACAGCTAGTGGTGGGAATGCAACTGAGACTTCCATGTATAGTGATGAAGTCGAAAATAGTTCAACGATTGATGATGGTGCctttaaaattataaatgatatcgaagaagaagaagcacaagatgaaatagaaataaaacaCTCCACCATCCTTGAAAATTATACCAGTGAAAATGACTATAATTTACTTCAGGAAGAAGATGAACATGCTAATTCTGATGAAATTAATCTGAAAGTTAAGAAAGactatgaaaagaaaataaaaactcgaAAATCTAAACGAATAGAAAAATCAGTGGCTTGCAGAATTTGTAGTCAAACATTCTCTTCCGAAGAAGCTCTAAAGGAACACGGAAACTCTCATATAATAAACGGACGATTCCGTTGTGATCAttgtaataaaacatttaaatatattcctAACTTACAAAGGCATATAGTTCGACACACTGGATTAAAAAAATACGAATGCACTTTTTGTAAATCAAGATTCTATGATTCATCTTCCCTCAGCAAACATGTTCGAATTCACACTGGAGAAAAGCCTTATGAATGTGGAGCATGCAAAAAACGTTTCGCACAACATTCTCAACTAAAGGTTCATGAAAGAGTACATAGTGATGAAAAACCAGTGGAATGTGATAtatgttttaaaagattttcgcaCAATGGTCTTTTGCATGCGCATAAAAAGTTACATTTATCGGTAAGAGAACATATCTGCACCATTTGCCAGAAAGGGTTTACATtatcaaatcaattaaaaagacACATGGAACTACATCAGAATCCAGAAATGAAATGTCAATGCAATGAATGCGGAAGAAGATATTCAAATAGTACTGGTTTAGCTTATCACATGCGAACACATACTGGTGAGCGTCCATATAAATGTACGATATGTTCCAAAGCTTTTATAGCGAAATATAATCTTTCTAATCACTTAATGACTCATTCTAAAGAGAAACCACCTCATAAATTTGAATGTCCTTGTTGTGGGAAAGGCTATTTCCGTAAAGGTGCGTTGGATGTTCATTTCCAAACACATACAGGAGGGCGGCCTTTTgaatgtaaaatatgtaaaaaaggaTTTTTACGTAAAGTTCATAGGGATGTCCATATGCGCACCCATATGGGACAGAGCCCACATCCTTGTTCAGTTTGTGGGAAACCTTTTGGGAGCTTATCAGCTCGTAAAAAACATATGTTTAAACATACGGGAGAAGAAAACTTTTTCTGTAATGTTTGTGAGAAAGGTTTTGGACAGGCTTGGATTAGGAATGCGCACCAAAAAAGACACTCATCTAAAGCTAAAAGTGATTCAACTGACCAGAATAAAACATAA
- Protein Sequence
- MDALCRCCLTEHPNIHNIFEDGILKKLRLCSNATISKDDSLPKIVCENCLEKIENSYEFRETCERSDSFFRDWIEKNDLRKEDESEIEKSKDDECEGSETGILKSTVISGFSMQKEEHIIDLYETDFIECLSTDNNEMIDLNEQTASGGNATETSMYSDEVENSSTIDDGAFKIINDIEEEEAQDEIEIKHSTILENYTSENDYNLLQEEDEHANSDEINLKVKKDYEKKIKTRKSKRIEKSVACRICSQTFSSEEALKEHGNSHIINGRFRCDHCNKTFKYIPNLQRHIVRHTGLKKYECTFCKSRFYDSSSLSKHVRIHTGEKPYECGACKKRFAQHSQLKVHERVHSDEKPVECDICFKRFSHNGLLHAHKKLHLSVREHICTICQKGFTLSNQLKRHMELHQNPEMKCQCNECGRRYSNSTGLAYHMRTHTGERPYKCTICSKAFIAKYNLSNHLMTHSKEKPPHKFECPCCGKGYFRKGALDVHFQTHTGGRPFECKICKKGFLRKVHRDVHMRTHMGQSPHPCSVCGKPFGSLSARKKHMFKHTGEENFFCNVCEKGFGQAWIRNAHQKRHSSKAKSDSTDQNKT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00454000; iTF_00455386;
- 90% Identity
- -
- 80% Identity
- -