Basic Information

Insect: Dioctria linearis
Gene Symbol: -
Assembly: GCA_963930735.1
Location: OZ005740.1:34834142-34835991[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.00038 0.18 14.9 0.2 3 23 248 268 247 268 0.97

2 12 4.2 2e+03 2.2 12.9 1 23 274 296 274 296 0.96

3 12 0.00086 0.41 13.8 3.5 1 23 302 324 302 324 0.97

4 12 1.3e-05 0.0062 19.5 1.0 1 23 330 352 330 352 0.98

5 12 0.006 2.8 11.1 3.7 2 23 359 380 358 380 0.96

6 12 1.7e-05 0.008 19.2 1.9 1 23 386 408 386 408 0.96

7 12 9e-05 0.043 16.9 1.1 1 23 415 437 415 437 0.98

8 12 2.7e-07 0.00013 24.8 3.9 1 23 443 465 443 465 0.99

9 12 8.9e-06 0.0042 20.0 0.8 1 23 474 496 474 496 0.98

10 12 0.0014 0.67 13.1 5.6 1 23 502 524 502 524 0.99

11 12 1.5e-05 0.0069 19.4 2.4 1 23 530 552 530 552 0.97

12 12 0.29 1.4e+02 5.8 0.1 1 14 558 571 558 579 0.77

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.00038	0.18	14.9	0.2	3	23	248	268	247	268	0.97
2	12	4.2	2e+03	2.2	12.9	1	23	274	296	274	296	0.96
3	12	0.00086	0.41	13.8	3.5	1	23	302	324	302	324	0.97
4	12	1.3e-05	0.0062	19.5	1.0	1	23	330	352	330	352	0.98
5	12	0.006	2.8	11.1	3.7	2	23	359	380	358	380	0.96
6	12	1.7e-05	0.008	19.2	1.9	1	23	386	408	386	408	0.96
7	12	9e-05	0.043	16.9	1.1	1	23	415	437	415	437	0.98
8	12	2.7e-07	0.00013	24.8	3.9	1	23	443	465	443	465	0.99
9	12	8.9e-06	0.0042	20.0	0.8	1	23	474	496	474	496	0.98
10	12	0.0014	0.67	13.1	5.6	1	23	502	524	502	524	0.99
11	12	1.5e-05	0.0069	19.4	2.4	1	23	530	552	530	552	0.97
12	12	0.29	1.4e+02	5.8	0.1	1	14	558	571	558	579	0.77

Sequence Information

Coding Sequence: ATGGATGCCCTATGCCGCTGTTGCCTAACAGAACACCCAAATATACACAACATTTTCGAAGATGGAATACTGAAAAAACTTCGATTATGTTCAAATGCTACAATTTCAAAAGATGATAGTCTACCGAAAATAGTTTGCGAAAATTGCttagaaaaaatcgaaaattcgtATGAATTTCGTGAAACTTGTGAAAGATCAGATTCCCTTTTAAGAGATTGGATAGAAAGGTTAGAAAAGAATGACTTAAGAAAagaatcggaaattgaaaaaccCGGTGATGACGAATGTGAGGGCAGCGaAACAGGAATATTAAAATCAACAGTTATTTGTGGTTTTTCTATGCAAAAAGAGGAGCATATCATAGATTTGTATGAAACCGACTTAATAGAATGCTTAAGTACGGCAAACGATGAGATGATCGATCTAAATGGGCAGACAGCTAGTGGTGGGAATGCAACTGAGACTTCCATGTATGGTGATGAAGTCGAAAATATTTCGACAATTGATGAAGGTGcctttaaaattataaatgatatcgaagaagaagaagaagaagcacaagatgaaatagaaataaaacactCCACCATCCTTGAAAATTATACCTGTGAAAATGACTATAATTTACTTCAGGAAGAAGATGAACATGctaattttgatgaaattaatCTGAAAGTTAAGAAAGACAATGAAACGAAAATAAAAACTCGAAAATCTAAACGAATAGCAAAATCAGTGGCTTGCAGAATTTGTAATCAAACATTCTCTTCCGAAGAAGCTCTAAAGGAACACGGAAATTCTCATATAGTAAATGGACGATTCTGTTGTCACCATTGTAGTAAAACATTTAAATGCATGGAATACTTTCAAAGACATTTAGTTCGACACACTGGATTAAAAAAACACGAATGCACTTTTTGTAAATCAAGATTCTATGATTCATCTTCCCTCAGCAAACATGCTCGAATTCATACTGGAGAAAAGCCTTATGAATGTGGAGCATGCAAAAAACGATTTGCACAAAATTCTAAACTAAAGGTTCATAAAAGAGTGCATAGTGATGAAAAACTAGTGGAATGTGATGTATGTTTTAAAAGATATTCGCACAATGGTCTTTTGCATTCgcataaaaaattacatttatcggTAAGAGAACATATCTGCACCATTTGCCAGAAAGGATTTACATTATCTAATCAATTAAAAAGACACATGGAACTACATCAGAATACAGAAATGAAATATCAATGCAATGAATGTGGAAGGAAATTTTTACATAGTACTGCTTTAGATAATCACATGGCAATGCATGAGAGTGAGCGTCCATATAAATGTTCGATATGTTCTAAGAATTTTAAAACGAAATCTTATCTTTCTACTCACTTAAGGACTCATTCTAAAGATAAACCACCCCCAAAATTTGAATGTCCTCAGTGTGGGAAAGGTTGTTCCAGTAAAAGTAAATTGGATGGACATTTACGAATACATACAGGAGAGCGGCCGTTTgaatgtaaaatatgtaaaaaacgatTCTTGCATAACTTTCATGTGGTTGTCCATATGCGTACCCATACGGGAGAGAGACCCTATCCTTGTTCAGTTTGTGACAAATCTTTTACTAGCTCATCAAAGCGTAAAACCCACATGTTTAATCATACGGGAGAAGAAAACTATTTCTGTAATATTTGTGAGAAAGGTTTTGGACAAGCTTGGATTAGGAATGCGcaccaaaaaagaaaatcatgCAAAGCGAAAACTGATACAACCGACCAGAAAAAAACTTCCAGTTAA
Protein Sequence: MDALCRCCLTEHPNIHNIFEDGILKKLRLCSNATISKDDSLPKIVCENCLEKIENSYEFRETCERSDSLLRDWIERLEKNDLRKESEIEKPGDDECEGSETGILKSTVICGFSMQKEEHIIDLYETDLIECLSTANDEMIDLNGQTASGGNATETSMYGDEVENISTIDEGAFKIINDIEEEEEEAQDEIEIKHSTILENYTCENDYNLLQEEDEHANFDEINLKVKKDNETKIKTRKSKRIAKSVACRICNQTFSSEEALKEHGNSHIVNGRFCCHHCSKTFKCMEYFQRHLVRHTGLKKHECTFCKSRFYDSSSLSKHARIHTGEKPYECGACKKRFAQNSKLKVHKRVHSDEKLVECDVCFKRYSHNGLLHSHKKLHLSVREHICTICQKGFTLSNQLKRHMELHQNTEMKYQCNECGRKFLHSTALDNHMAMHESERPYKCSICSKNFKTKSYLSTHLRTHSKDKPPPKFECPQCGKGCSSKSKLDGHLRIHTGERPFECKICKKRFLHNFHVVVHMRTHTGERPYPCSVCDKSFTSSSKRKTHMFNHTGEENYFCNICEKGFGQAWIRNAHQKRKSCKAKTDTTDQKKTSS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00455374;
90% Identity: -
80% Identity: -