Druf076996.1
Basic Information
- Insect
- Dioctria rufipes
- Gene Symbol
- -
- Assembly
- GCA_963924295.1
- Location
- OZ002742.1:186320690-186330807[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 8.8e-05 0.041 16.9 6.0 1 23 229 251 229 251 0.98 2 17 0.0032 1.5 12.0 0.2 1 23 280 302 280 302 0.98 3 17 0.097 45 7.3 1.8 2 19 323 340 322 343 0.91 4 17 6.9e-06 0.0032 20.4 1.2 1 23 372 394 372 394 0.95 5 17 1.6e-05 0.0072 19.3 2.4 3 23 457 478 456 478 0.95 6 17 1.5e-06 0.00072 22.4 2.2 1 23 506 528 506 528 0.99 7 17 9.7e-06 0.0045 19.9 0.3 1 23 557 580 557 580 0.98 8 17 1.6 7.4e+02 3.5 0.1 1 23 602 624 602 624 0.94 9 17 0.013 5.9 10.1 0.2 1 22 661 682 661 682 0.95 10 17 1.6e-05 0.0075 19.2 2.1 2 23 706 728 705 728 0.96 11 17 0.0035 1.6 11.9 3.5 1 20 743 762 743 765 0.94 12 17 5.3e-05 0.025 17.6 4.0 1 23 815 838 815 838 0.96 13 17 0.0025 1.1 12.3 0.2 6 23 856 873 855 873 0.98 14 17 0.11 53 7.1 0.2 1 23 885 908 885 908 0.96 15 17 0.022 10 9.4 1.2 2 23 922 944 921 944 0.90 16 17 0.032 15 8.9 1.9 1 23 954 977 954 977 0.96 17 17 0.0026 1.2 12.3 0.4 2 23 997 1019 997 1020 0.94
Sequence Information
- Coding Sequence
- ATGAGCAACATGGAGAATTATATTGACACATGCCGGACATGCATGAAAAGAGAATATGGAATGAAATGCATTTTCAATTCTGAAGTAAATTGTGTCCCGGTGTCCCAAATGTTATCTTTTACAACTCCTCTACTTGTTCGTCCAGACGATGACTTACCAAATACACTCTGTCCCAATTGTTTACAATTGCTAATtagcttttataaatttcaacaaatgtgCATTGAATCAGACCAGAAATTCAGATGTAAGCCAAAAATTAGCTCACCTCCTAAAGAAGTATCTCCTCAGAGTTATAATATAAAAACGCAATCACCACAACAAGCACCGCGATTACCACCACTGCCGCCACCACCATTACCACCTCCACCACCTGATGATTATATCATACCAAATAATAATAGCAAATTTCAATTGGGCTGGAATTCGTCAGTATCTTGTCCAGTTGTAGAAGTTTCTGATGATGAAGATATTGTACTCAAATTTGAATATGAAAACGAACTTCCTGGACCTCTTGTTGAGGATGAAGAATCTGATAATATGATTGATGAATACGAACAATTCGATAAGTTGCCCATAATTGATGTTAAATTGGATGGAAAACGCAGCAAAAATGAATCTTTAAATAAGTCAACAGAAGAGGGGCGTACATGGAACAATAATGAAAATATACTACCTGAAGTCCATGAATGTAAAATATGTGGATATAAATGCGAGCATCAAGATCTTCTGCAAAGGCATTTGAACACACATTATACACAAGATACGCAAATAAATTCAACATCAAAACCGGCAAGTAAAATTGTGCAGAAAACGACTGCTCCAATAAAGTTGGCATATATTTGCACCGTATGCAAAATGGCTTTTGCTGGGCAAGATCGTTTGGTGATGCATAAAAAAACTCATGATAAGCAAGGGTTAACGAGAAATGAAATAACTCCACAAAACATAAACAGTTATAATCTGGAATGTAAAGTTTGTAAAAGATTTTACAATAATCAGGAATCATATGATCGACATTCTTGTGTACCTGCTGTAACAACATGCAATTATGACGGTTCAAGttCAAATACAACAGTTAATGTCAACGTAAATATACAAACTGATAAAACTCATGACTGCGACATTTGTTCGAAATCATTTACTACTTGGGATGATTTCAGAGCTCATTGGCAACAGCATCCAGAAAATCAAAGGGGAAATAATACATCGGCACAAAGTACAAGATTCACAGTTTCAACATCTTCTGATTGTAAGCCACCCATAATGCATGAAGCTGCATCACAACAACAaccacaacaacagcaacaaccgCAAGTAGTAAATGATACGAGTGACAATGCTGTGCAATTGTTAGGGAAGAACTTTTGCAGCAAGTGTTATCGGGTATTTAACAATTGGGCTAATTTGAAACGTCACATGAAGTTTAAACATAATGTGACGGACTTAGAAGACGATGGAACGGAGGATAATAACCCAGTgaaTGCTTTGAGGGCATATAGGATTTGCCGTTTGTACGAATGTAATGTTTGTGGAAAAACCTTTGATCGTCTAGGACATATGATAAGACATAAAAAAACACATCTAAAGAAAAAACAAGCTATAGAAAAAGCAAGACTTGAAgaggctgctgctgctgctgctgctgaaaTTAATACAAAGAAACCTTATCAGTGTGACATTTGCGGAATATTTATAAGTAATGAGACCAATCTTCGTCGTCATATAAAGAGAATCCATGAAATCACTGTGGATCAAGGATTAGAGGGAAAAGAGACTAAGTTGAGTGAAGAAGAGGACATATTCACTTGTATTGTTTGTGAAGAAGAATTACCTTCTCGTCGGGCTTTGGTACAACATTTGACAAAACATAAgaaAGATAAGCAGTCAATTAatacagaagaagaaggaggaggaGAACAACTTAAAGACGAAAAGAATGATGTAGTTGAAAGACTAAGTCGTACTCGAGGCAAATTGTTTAAGTGCTCTACTTGTGGTAGTCGTTTTGGAGTAAAAGAAACTCTAGAGGAACATGAGAAAACGATGTGTAATCAATCGAAgccatcgtcgtcgtcgtcgtcgtcacaACCTCTAGAAAAAGATTTGTCCAGTCCGTGCAGTTTCTGTGACAAGATATTTGAACATAAAAGTAGTCTAATAAGGCATTTGAAGTCAACTCACAGTTTGTCTATGGTTGAACCAACTTCTAAAACGGgATTATTATACAAATGCCTTACTTGCAATAAGTCATTCATAAATATTAAGAATTTAGAGGATCACAAAAATTGCCATGAAGTATTGGAGAAATATCCTCCTTCCAAACATAATGAACAAAAACCGCAAACAAGTGAAAAACCGAATGAAAGCAaaccaatgaaaaaaaaaactgatgagaaagaaaagaaaacgcTCTCTAATATTTGGTCCGGCGCTGCACCGCATAAATGTTTAGAATGCAAAAAGGTGATTAGTACTCGATCTAATTTGAAAAAACACATGTATCGACAACATCGGAATCGATTTATTCCGCTAAATAGAAAaaaatatatagTCCAATGTGCATGTTCAAAACCATTCGATAGCCAGACCAACCTTTTCCGACATTATCGAGCACATATTCCCGAAATAAAAACTAGGAACGAAAATAAGTATACATGTCAGTTGTGCTCAATAATTCGGCCACAAGCCTGGCAAATTAGACGACACATGAAAGATTCTCATAAGGTTACCAAAAAAGAATTGGAATTGATAGATTGGAAGATGTGTGAATTTTGTAAAACATATTTTACCAATGAGGAACAATTGAAACTGCATGTTGATCAAAAACATGAAAAtgcCGCCTTATCAAAAACAGTTTATAGATGCAAGTCTTGTGAGAAATTTTTCTTCGAAATGGATGTGTTGACGAAACATTTAAAAGAATCTCACAATCTGGAAGATAAAAGTGAAGGGGGaatACCAAACTTCCTTGAGGAAACGTGGCCAACATGTAGAATATGTGATAAACCTTTCGTAAGCATTTATGGCGTTAGAAGGCATATTGAAAATGTTCATCACATCATACAAGTTAAGAACGAACAATCAATGACGGCGGTAtccaaataa
- Protein Sequence
- MSNMENYIDTCRTCMKREYGMKCIFNSEVNCVPVSQMLSFTTPLLVRPDDDLPNTLCPNCLQLLISFYKFQQMCIESDQKFRCKPKISSPPKEVSPQSYNIKTQSPQQAPRLPPLPPPPLPPPPPDDYIIPNNNSKFQLGWNSSVSCPVVEVSDDEDIVLKFEYENELPGPLVEDEESDNMIDEYEQFDKLPIIDVKLDGKRSKNESLNKSTEEGRTWNNNENILPEVHECKICGYKCEHQDLLQRHLNTHYTQDTQINSTSKPASKIVQKTTAPIKLAYICTVCKMAFAGQDRLVMHKKTHDKQGLTRNEITPQNINSYNLECKVCKRFYNNQESYDRHSCVPAVTTCNYDGSSSNTTVNVNVNIQTDKTHDCDICSKSFTTWDDFRAHWQQHPENQRGNNTSAQSTRFTVSTSSDCKPPIMHEAASQQQPQQQQQPQVVNDTSDNAVQLLGKNFCSKCYRVFNNWANLKRHMKFKHNVTDLEDDGTEDNNPVNALRAYRICRLYECNVCGKTFDRLGHMIRHKKTHLKKKQAIEKARLEEAAAAAAAEINTKKPYQCDICGIFISNETNLRRHIKRIHEITVDQGLEGKETKLSEEEDIFTCIVCEEELPSRRALVQHLTKHKKDKQSINTEEEGGGEQLKDEKNDVVERLSRTRGKLFKCSTCGSRFGVKETLEEHEKTMCNQSKPSSSSSSSQPLEKDLSSPCSFCDKIFEHKSSLIRHLKSTHSLSMVEPTSKTGLLYKCLTCNKSFINIKNLEDHKNCHEVLEKYPPSKHNEQKPQTSEKPNESKPMKKKTDEKEKKTLSNIWSGAAPHKCLECKKVISTRSNLKKHMYRQHRNRFIPLNRKKYIVQCACSKPFDSQTNLFRHYRAHIPEIKTRNENKYTCQLCSIIRPQAWQIRRHMKDSHKVTKKELELIDWKMCEFCKTYFTNEEQLKLHVDQKHENAALSKTVYRCKSCEKFFFEMDVLTKHLKESHNLEDKSEGGIPNFLEETWPTCRICDKPFVSIYGVRRHIENVHHIIQVKNEQSMTAVSK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00453968;
- 90% Identity
- -
- 80% Identity
- -