Dlin076277.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Dioctria linearis
Gene Symbol
-
Assembly
GCA_963930735.1
Location
OZ005742.1:241681681-241693945[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 20 0.00029 0.14 15.3 6.2 1 23 231 253 231 253 0.98
2 20 0.0036 1.7 11.8 0.2 1 23 282 304 282 304 0.98
3 20 0.11 52 7.2 1.8 2 19 325 342 324 345 0.91
4 20 1e-06 0.00049 23.0 0.2 1 23 368 390 368 390 0.97
5 20 7.9e-06 0.0037 20.2 1.2 1 23 418 440 418 440 0.95
6 20 1.8e-05 0.0083 19.1 2.4 3 23 503 524 502 524 0.95
7 20 1.7e-06 0.00083 22.3 2.2 1 23 552 574 552 574 0.99
8 20 1.1e-05 0.0052 19.8 0.3 1 23 603 626 603 626 0.98
9 20 1.8 8.5e+02 3.3 0.1 1 23 650 672 650 672 0.94
10 20 0.58 2.7e+02 4.9 0.5 6 23 721 738 721 738 0.97
11 20 0.0056 2.6 11.2 5.6 2 23 752 773 751 773 0.96
12 20 0.041 19 8.5 0.1 1 22 776 797 776 797 0.95
13 20 8.7e-06 0.0041 20.1 2.3 2 23 819 841 818 841 0.96
14 20 0.0018 0.83 12.8 4.3 1 20 856 875 856 878 0.94
15 20 6e-05 0.028 17.4 4.0 1 23 928 951 928 951 0.96
16 20 0.00072 0.34 14.0 0.2 6 23 969 986 968 986 0.98
17 20 0.043 20 8.4 0.4 1 23 998 1021 998 1021 0.96
18 20 0.025 12 9.2 1.2 2 23 1035 1057 1034 1057 0.90
19 20 0.036 17 8.7 1.9 1 23 1067 1090 1067 1090 0.96
20 20 0.0029 1.4 12.1 0.4 2 23 1110 1132 1110 1133 0.94

Sequence Information

Coding Sequence
ATGAGCAACATGGAGAATTACATTGACACATGCCGGACATGCACGAAAAGAGAATATGGAATGAAATGCATTTTTAACTCTGAAGTAAATTCTGTCCCGGTGTCCCAAATGTTATCTTTTACAACTCCTCTACTTGTTCGTCCAGACGATGACTTACCAAATACTCTCTGTCCCAATTGTTTACAATTGCTAATtagcttttataaatttcaacaaatgtgCATTGAATCAGACCAGAAATTGAGATTGAAGCCAAAAATTAGCTCACCACCTAAAGAAGTATCTACTCTGAGTTATAATATAAAAACGCAGCAGTCACCACAACAAGCACCGCGATTGCCACCACTGCCACCACCACCtctaccacctccaccaccacctgaTGATTATATCATAccaaataataatagcaaatttCAATTGGGCTGGAATTCGTCAGTATCATGTCCAGTTGTAGAAGTTTCAGATGATGAAGATATTGTACTCAAATTTGAATATGAAAACGAACTTCCTGGACCTCTTGTTGAGGATGAAGAATCTAATCATATGATTGATGAATACGAACAATTCGATAAGTTGCCAATAATTGATGTTAAATTCGATGGAAAACGCAGCAAAAATGAATCTTTAAATAGGTCAACAGAAGAGGGTCGTACATGGAACAATAATGATAATATACTACCTGAAGTCCATGAATGTAAAATATGTGGATTTAAATGCGAGCATCAAGATCTTCTGCAAAGGCATTTGAACACACATTATACACAAGATACGCAAATAAATTCAACATCAAAACCGGCAAGTAAAATTGTGCAGAAAACGACTGCTCCAATAAAGTTGGCATATATTTGCACCGTATGCAAAATGGCTTTTGCTGGGCAAGATCGTTTGGTGATGCATAAAAAAACTCATGATAAGCAAGGGTTAACGAGAAATGAAATAACTCCACAAAACATAAACAGTTATAATCTGGAATGTAAAGTTTGTAAAAGATTTTACAATAATCAGGAATCATATGATCGACATTCTTGTGTACCTGCTGTAACAACATGCAATTATGACGGTTCAAGCAAAAACTATTTATGTGATGAAAACAATTTCTATACTTGCAATATATGCAAACGGGCATTCCCGACATGGGAAGAGTTAACGAAACATATTAGTGAGCACACAATAAAGATATTGTATGGCAGTGATCCTAgTTCAAATACAACAGTTAATGTCAATGTAAATATACAAACAGATAAAACCCATGACTGCGACATTTGTACGAAATCATTTACTACTTGGGATGATTTCAGAGCTCATTGGCAACAACATCCAGAAAATCAAAgGGGAAATAATACATCGGCACAAGGTACAAGATTCACAGTTTCAACATCTTCTGATTGTAAGCCACCATTAATGAATGAGGCTGCATCacaacaacaaccacaacaacagcaacaaccgCAAGTAGTAAATGATTCGAGTGATAATGCTGTCCAATTGTTAGGGAAGAACTTTTGCAGCAAATGTTATCGGGTATTTAACAATTGGGCTAATTTGAAACGTCACATGAAATTTAAACATAATGTGACGGACTTAGAAGACGATGGACCGGAGGATAATAATCCAgtgaATGCTTTGAGGGCATATAGGATTTGCCGTTTGTACGAATGTAATGTTTGTGGAAAAACCTTTGATCGTCTAGGACATATGATAAGGCATAAAAAAACACATCTAAAGAAAAAACAAGCTATAGAAAAACAAAGgctTGAAgaggctgctgctgctgctgctgctgaaaTTAATACAAAGAAACCTTATCAGTGTGACATTTGCGGAATATTTATAAGTAATGAGACCAATCTTCGTCGTCATATAAAGAGAATCCATGAAATCACTGTGGACCAAGACCAAGGATTAGAGGGAAAAGAGACTAAGTTGAGTGAAGAAGAGGACATATTCACTTGTATTGTTTGTGAAGAAGAATTACCTTCTCGTCGGGCTTTGGTACAACATTTGACAAAACATAAgaaAGACAAGCAGTCAATTAATACAGAAGAAGAAGTAGGAGGAGAACAACTTAAAGACGTAAAGAATGATGGAGCTGAAAGACTAAGTCGTACTCGAGGGAAAATGGTTGTTGTTGATGATACAAATTCACCGTTTATTTGTTGTGGAAGAACTTTCAAATCTCAATTGTTTCTTGATTATCACAGGATTTCACATAATTTCAGAGTAAATAAACGGAACAATCGAAACAAAACCACTTGCAAATTTTGCAACAAGAAATGCAAAAGCTTTTTCAATTTGACCCAGCACATGGTTATACACAAATTGTTTAAGTGCGCTACTTGTGGTAGTCGTTTTGGAGTAAAAGAAACTCTAGAGGAACATGAGAAAACGATGTGTATTCAATCGAAGCCATCGTCGTCGTCACCACAACCTCTAGAAAAAGATTTGTCCAGTCCGTGCAGTTTCTGTGACAAGATATTTGAACATAAAAGTAGTCTAATAAGGCATTTGAAGACAACTCACAGTTTGTGTATGATTGAACCAACTTCTAAAACGGGATTATTATACAAATGCCTTACTTGCAATAAGTCATTCTCAAATGTTAAGAATTTAGAGGATCACAAAAATTGCCATGAAGTATTGGAGAAATATCCTCCTGCCAAACATAATGAACAAAAGCCGCAAACAAATGAAAAACCGATTGAAAGCAAacccatgaaaaaaaaaactgatgagaaagaaaagaaaacgcTCTCTAATATTTGGTCCGGCGCTGCACCACATAAATGTTTAGAATGCAAAAAGGTGATTAGTACTCGATCTAATTTGAAAAAACACATGTATCGACAACATCGGAATCGATTTATTCCGCTAAATACAAAaaaatatatagTCCAATGTGCATGTTCAAAACCATTCGATAGCCAGTCTAACCTTTTCAGACATTATCGGGCACATATTCCCGAAATAAAAAGTAGGAACGAAAATAAGTATACATGTCAGTTGTGCTCAATAATTCGGTCACAAGCCTGGCAAATTAGACGACACATGAAAGATTCTCATAAGGTTACCAAAAAAGAATTGGAATTGATAGATTGGAAGATGTGTGAATTTTGTAAAACATATTTTACCAATGAGGAACAATTGAAACTGCATGTTGATCAAAAACATGAAAAtgCCGCCTTATCCAAAACAGTCTATAGATGCAAGTCATGTGAGAAATTTTTCTTCGAAATGGATGTGTTGACGAAACATTTAAAAGAATCTCACAATCTGGAAGATAAAAGTGAAGGGGGaataTCAAACTTCCTTGAAGAAACGTGGCCAACATGTAGAATATGTGATAAACCTTTCGTAAGCATTTATGGCGTTAGAAGGCATATTGAAAATGTTCATCACATCATACAAGTTAAGAACGAACAATCAATAACGGCGGtatccaaataa
Protein Sequence
MSNMENYIDTCRTCTKREYGMKCIFNSEVNSVPVSQMLSFTTPLLVRPDDDLPNTLCPNCLQLLISFYKFQQMCIESDQKLRLKPKISSPPKEVSTLSYNIKTQQSPQQAPRLPPLPPPPLPPPPPPDDYIIPNNNSKFQLGWNSSVSCPVVEVSDDEDIVLKFEYENELPGPLVEDEESNHMIDEYEQFDKLPIIDVKFDGKRSKNESLNRSTEEGRTWNNNDNILPEVHECKICGFKCEHQDLLQRHLNTHYTQDTQINSTSKPASKIVQKTTAPIKLAYICTVCKMAFAGQDRLVMHKKTHDKQGLTRNEITPQNINSYNLECKVCKRFYNNQESYDRHSCVPAVTTCNYDGSSKNYLCDENNFYTCNICKRAFPTWEELTKHISEHTIKILYGSDPSSNTTVNVNVNIQTDKTHDCDICTKSFTTWDDFRAHWQQHPENQRGNNTSAQGTRFTVSTSSDCKPPLMNEAASQQQPQQQQQPQVVNDSSDNAVQLLGKNFCSKCYRVFNNWANLKRHMKFKHNVTDLEDDGPEDNNPVNALRAYRICRLYECNVCGKTFDRLGHMIRHKKTHLKKKQAIEKQRLEEAAAAAAAEINTKKPYQCDICGIFISNETNLRRHIKRIHEITVDQDQGLEGKETKLSEEEDIFTCIVCEEELPSRRALVQHLTKHKKDKQSINTEEEVGGEQLKDVKNDGAERLSRTRGKMVVVDDTNSPFICCGRTFKSQLFLDYHRISHNFRVNKRNNRNKTTCKFCNKKCKSFFNLTQHMVIHKLFKCATCGSRFGVKETLEEHEKTMCIQSKPSSSSPQPLEKDLSSPCSFCDKIFEHKSSLIRHLKTTHSLCMIEPTSKTGLLYKCLTCNKSFSNVKNLEDHKNCHEVLEKYPPAKHNEQKPQTNEKPIESKPMKKKTDEKEKKTLSNIWSGAAPHKCLECKKVISTRSNLKKHMYRQHRNRFIPLNTKKYIVQCACSKPFDSQSNLFRHYRAHIPEIKSRNENKYTCQLCSIIRSQAWQIRRHMKDSHKVTKKELELIDWKMCEFCKTYFTNEEQLKLHVDQKHENAALSKTVYRCKSCEKFFFEMDVLTKHLKESHNLEDKSEGGISNFLEETWPTCRICDKPFVSIYGVRRHIENVHHIIQVKNEQSITAVSK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00455361;
90% Identity
-
80% Identity
-