Basic Information

Insect: Dioctria linearis
Gene Symbol: -
Assembly: GCA_963930735.1
Location: OZ005741.1:26627618-26654809[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 0.0034 1.6 11.9 0.5 2 20 190 208 189 209 0.94

2 15 0.012 5.4 10.3 1.6 2 23 215 237 214 237 0.94

3 15 8.9e-05 0.042 16.9 0.3 1 23 243 265 243 265 0.98

4 15 9.3e-05 0.044 16.8 3.3 1 23 271 294 271 294 0.96

5 15 0.005 2.4 11.4 4.6 1 23 299 321 299 321 0.99

6 15 5.9e-06 0.0028 20.6 6.7 1 23 327 349 327 349 0.99

7 15 1.9e-08 9.1e-06 28.4 0.9 1 23 355 377 355 377 0.96

8 15 0.0019 0.89 12.7 2.1 3 23 385 405 383 405 0.96

9 15 9.7e-07 0.00046 23.1 0.9 1 23 411 433 411 433 0.99

10 15 0.00028 0.13 15.3 2.6 1 23 439 462 439 462 0.95

11 15 8e-05 0.038 17.0 2.3 1 21 490 510 490 512 0.95

12 15 4.5e-06 0.0021 21.0 3.0 1 23 518 541 518 541 0.93

13 15 4.6e-06 0.0022 20.9 3.6 1 23 547 569 547 569 0.98

14 15 4.9e-06 0.0023 20.8 2.3 1 23 575 597 575 597 0.98

15 15 0.001 0.48 13.6 0.4 1 23 603 625 603 625 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	0.0034	1.6	11.9	0.5	2	20	190	208	189	209	0.94
2	15	0.012	5.4	10.3	1.6	2	23	215	237	214	237	0.94
3	15	8.9e-05	0.042	16.9	0.3	1	23	243	265	243	265	0.98
4	15	9.3e-05	0.044	16.8	3.3	1	23	271	294	271	294	0.96
5	15	0.005	2.4	11.4	4.6	1	23	299	321	299	321	0.99
6	15	5.9e-06	0.0028	20.6	6.7	1	23	327	349	327	349	0.99
7	15	1.9e-08	9.1e-06	28.4	0.9	1	23	355	377	355	377	0.96
8	15	0.0019	0.89	12.7	2.1	3	23	385	405	383	405	0.96
9	15	9.7e-07	0.00046	23.1	0.9	1	23	411	433	411	433	0.99
10	15	0.00028	0.13	15.3	2.6	1	23	439	462	439	462	0.95
11	15	8e-05	0.038	17.0	2.3	1	21	490	510	490	512	0.95
12	15	4.5e-06	0.0021	21.0	3.0	1	23	518	541	518	541	0.93
13	15	4.6e-06	0.0022	20.9	3.6	1	23	547	569	547	569	0.98
14	15	4.9e-06	0.0023	20.8	2.3	1	23	575	597	575	597	0.98
15	15	0.001	0.48	13.6	0.4	1	23	603	625	603	625	0.97

Sequence Information

Coding Sequence: ATGACTGTGTACAAAGCTGAGGTTCCCAATTCATTCCTCTATGGTCCAGAAATGATTACACAAGCCGATCAGGATGAGCTAACTGAACCAAACGAGATAACACATAACGATGGACTGCCCCAGCAGATCTGCAGTGATTGTATGAGCCACCTCTCCAACATCAGCTCATTTAGAAGACAGTGTGAAAAAAGTCAATTAATTCTAACTGCTTACTTCAAGGGAGAAATCATATCAAATGAACCAAGAGTTCAGGAAATTGAAATTGTTCATGTAGATAACGATGGCACTGTCTATAAGGTCGAAGATGATGAAGGTTATGAAAATGCTAATGAAAATACCTCTGAATCGGAGCTCTTTACCACATGCTTCCTAGAAATCGATGACAAATCTATGGTCGAAGAAAGGATTGAGTTAGACTGTGAAAGTACACCGCTTGATGAAATTTCCAATGAGGGGCTAGTTCTTGGAATTATGGAAAATCTTCCGTCCGATGAAAAATCTTCTCTGCAGGAGCAGAaccttgaaattaaaaaaaatgagCCAGCTCCAGTTAAATCTGCGATCTTAATGTGTAATAAATGTCGGATGACATTTAACAATTCTATCAAGTTGGAAAAGCATCTTACCTGCTGTGATAACATGAAGTGTAGCGTTTGTAATAAGACGCTTATGAATAAGAAAAAGTTACTAGCTCACTTCAAAGAATACCATGCACAAGATGGTCGTTTTGTCTGTCCAATTTGTTATCGCGATTTCGCAAATGTATCGAACCGCAACTCTCACATGCAGTCccataataaattaaattcattcaaatGCGACATTTGTGATCAAGGATTTAAGAGCAAAGTGTACTTAAGTAAGcacaaaaaacatgtacacacgACAGGCAACTATGAATGTTCGATGTGCCTTCAACGTTTCGTAAATAAAACCAAATTTCACTATCACATTAGATCGCATAATCCAAACAAGAAATACCAATGTAAATACTGTGATAAATCGTTTATGCAGAAACATCACCTGTCGAATCATGAACGGATACACACCGGGCTGAAACCCTTTTTGTGTAGTATTTGTGGGAAAGGCTTTAAACAGGAATCCAATTTAAAGCTTCATATGCGAACTCACACTGGCGTAAAACCTTACGGTTGTAGTGTTTGTGGAAAAGATTACGCACAGCGGAGCTCATATGTCATGCACATGCATCACCATAGCGGCAACCGCCCATATCAATGTGAAGTTTGTGGAAAGAATTTCCTACAAAAGTCAACATTAACAGTTCATTTGCGAACGCACACCGGTGAAAGACCATACAAGTGCGATCAATGCGATCGAGCTTTTATGCAGGCTCATCAACTTAAATATCATAAATATTCCGCCCACAATGGACCTCCTCCGATAAGCAGAAAATATTTTGGAACAGGAGCAAATGAAAATGGACAACAGAGTAATTCAAATCCTTCCTATAGTTGTCCTTTGTGCTCAAAAACTTTCAAGATACCTTCCTCTCTGACGACCCACATTAAGTGTCACTCAAAAGAACGAAAGCACATGTGTACATATTGTGGTAACTCCTTTAAACGTGCCGATCATCTAAAAAAACACATAAGTGGGGTTCACTTGAAACAAAAGCCCTACGCTTGTGATTACTGTAATAAAACTTTCTCACAATGCAGCGATCGAAACATTCATATGAGGAGTCACACTcAGGACAAGCCTTATAATTGCCCCCACTGCAAAAAAGCGTTTAAATTGCAAAAATCTCTTCGTGCCCATGAACGGATTCATACCGGTGAAAAACCATTTGCCTGTAAAGTATGCCAGAAGGATTTTATGACATACAATGCCCTTGCAATTCACACAATGAAACATTCAGACGACAAAAATAAAGAACATACGGACAGAGCTCTAGCCGAAATACAGAATGCGCTAGTCTCAACTGGGGCTATTGTATCACAGGAAATGTTACAAACTGGTAATGTTTCATCAGCAGCAACTACAGCATTACAGAAACCTCAACTTTTCGAGTATAATATAGAAGATACATGTGAAAGCCAAGATAGTATCGCAAAATACTTTAATAACGCGGAAGAATATTACGAAACGGACTATGAAGACGAAGTGCTACTTGATGTAATATAA
Protein Sequence: MTVYKAEVPNSFLYGPEMITQADQDELTEPNEITHNDGLPQQICSDCMSHLSNISSFRRQCEKSQLILTAYFKGEIISNEPRVQEIEIVHVDNDGTVYKVEDDEGYENANENTSESELFTTCFLEIDDKSMVEERIELDCESTPLDEISNEGLVLGIMENLPSDEKSSLQEQNLEIKKNEPAPVKSAILMCNKCRMTFNNSIKLEKHLTCCDNMKCSVCNKTLMNKKKLLAHFKEYHAQDGRFVCPICYRDFANVSNRNSHMQSHNKLNSFKCDICDQGFKSKVYLSKHKKHVHTTGNYECSMCLQRFVNKTKFHYHIRSHNPNKKYQCKYCDKSFMQKHHLSNHERIHTGLKPFLCSICGKGFKQESNLKLHMRTHTGVKPYGCSVCGKDYAQRSSYVMHMHHHSGNRPYQCEVCGKNFLQKSTLTVHLRTHTGERPYKCDQCDRAFMQAHQLKYHKYSAHNGPPPISRKYFGTGANENGQQSNSNPSYSCPLCSKTFKIPSSLTTHIKCHSKERKHMCTYCGNSFKRADHLKKHISGVHLKQKPYACDYCNKTFSQCSDRNIHMRSHTQDKPYNCPHCKKAFKLQKSLRAHERIHTGEKPFACKVCQKDFMTYNALAIHTMKHSDDKNKEHTDRALAEIQNALVSTGAIVSQEMLQTGNVSSAATTALQKPQLFEYNIEDTCESQDSIAKYFNNAEEYYETDYEDEVLLDVI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00455354;
90% Identity: iTF_00455354;
80% Identity: -