Dlin033027.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Dioctria linearis
Gene Symbol
-
Assembly
GCA_963930735.1
Location
OZ005741.1:26656596-26664578[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 15 0.013 6.2 10.1 0.3 2 20 300 318 299 319 0.94
2 15 0.005 2.4 11.4 1.0 2 23 325 347 324 347 0.94
3 15 0.0028 1.3 12.2 1.0 2 23 354 375 353 375 0.96
4 15 0.0001 0.048 16.7 3.1 1 23 381 404 381 404 0.96
5 15 0.0043 2 11.6 3.7 1 23 409 431 409 431 0.99
6 15 6.8e-06 0.0032 20.4 6.7 1 23 437 459 437 459 0.99
7 15 6.7e-07 0.00032 23.6 2.7 1 23 465 487 465 487 0.96
8 15 3.2e-06 0.0015 21.4 1.4 1 23 493 515 493 515 0.98
9 15 1.8e-08 8.4e-06 28.5 0.7 1 23 521 543 521 543 0.99
10 15 7.4e-05 0.035 17.2 2.2 1 23 549 572 549 572 0.95
11 15 9.2e-05 0.044 16.8 2.3 1 21 600 620 600 622 0.95
12 15 1.4e-05 0.0066 19.4 1.9 1 23 628 651 628 651 0.93
13 15 1.1e-05 0.0051 19.8 2.8 1 23 657 679 657 679 0.98
14 15 1.1e-05 0.005 19.8 2.0 1 23 685 707 685 707 0.98
15 15 0.00073 0.35 14.0 0.8 1 23 713 735 713 735 0.98

Sequence Information

Coding Sequence
ATGTCTATTGAATCTAAAAAGTTCCGTCCAAATGCTCCGTACGCAGCGACATGTGTTTTTAGGCAAAATGCAACTTTGGGACTGGAATTAAATCAAGCAACACCAAGTAACTCTTCAATTTCGACCAGTGAACAACCGCCTTGTGAAAATTATACTAATTACGAATCACCCTTATCCAAAAGGGATAATTGTTTAATTAATACTTGCAAAAACCTTCaaaaacaaaatatagaacacACAAAGGCTTTGACTGAAATTATAGATATTCTTGGAAAACAGCAAGCAATGTTAAGCAGACAAAATGTACTTTTGGACCGACTAAGTGCAAAAATATTTCCCGAAAAAACTAACTTCAACATATTTCCAATTGATAATAGCCAACAGCTGGATGACATTGAAGAGGAGAATAAGCCCCAacaagaactaataACACATAACGATGGACTGCCCCAGCAGATCTGCAGTGATTGTATGAGCCACCTCTCCAACATCAGCTCGTTTAGAAGACAGTGTGAAAAGAGTCAATTAATTCTAACTGCTTACTTCAAGGGAGAAATCATATCAAATGAACCAAGAGTTCAGGAAATTGAAATTGTTCATGTAGATAACGATGGCACTGTCTATAAGGTCGAAGATGATGAAGGTTATGAAAATGCTAATGAAAATACCTCTGAATCGGAACTCTTTACCACATGTTTCCTAGAAATCGATGACAAATCTATGGTCGAAGAAAGGATTGAGTCAGACTGTGAAAGTACACCGCTTGATGAAATTTCCAATGAGGGGCTAGTTCTTGGAATTATGGAAAATCTTCCGTCCGATGAAAAATCTTCTCTGCAGGAGCAGAaccttgaaattaaaaaaaatgagCCAGCTCCAGTTAAATCTGCGATCTTAATGTGTAATAAATGTCGGATGATATTTAACAATTCTATCAAGTTAGAAAAGCATCTTACCTGCTGTGATAGCATGAAGTGTAGCGTTTGTAATAAGACGCTTATGAATAAGAAAGAGTTACTAGCTCACTTCAAAGAATACCATGCACAAGATGGTCGATGTGTCTGTCCAATTTGTTATCGCGATTTCGCAAGTGTATCGAACCGCAACTCTCACTTGCAGTCCcataataaattgaattcattcaaatGCGACATTTGTGATCAAGGATTTAGGAGCAAAGTGTACTTAAGTAAGcacaaaaaacatgtacacacgACAGGCAACTATGAATGTTCGATGTGCCTTCAACGTTTCGAAAATAAGGCTAAATTTCACTATCACATTAGATCGCATAGTCCAAACAAGAAATACCAATGTAAATACTGTGATAAATCGTTTATGCAGAAACATCACCTGTCGAATCATGAACGGATACACACCGGGCTGAAACCCTTTTTGTGTAGTATTTGTGGGAAAGGCTTTAAACAGGAATGCAATTTAAAGCTTCATATGCGAACTCACACTGGTGTAAAGCCTTACGTTTGTAGTGTTTGTGGGAAAGATTTCGCACAGCGGAGCTCATATGTCATGCACATGCGTCACCATAGTGGCAACCGCCCATATCAATGTGAAGTTTGTGGAAAGAATTTCATACAAAAGTCAACATTAACAGTTCATTTGCGAACGCACACCGGTGAAAGACCATACAAGTGCGATCAATGCGATCGAGCTTTTGTGCAGGCTCATCAACTTAAATATCATAAATATTCCGCCCACAATGGACCTCCTCCGACAAGCAGAAAATATTTTGGAACAGGAGCAAATGAAAATGGACAACAGAATAATTCAAATCCTTCCTATAGTTGTCCTTTGTGCTCAAAAACTTTCAAGATACCTTCCTCTCTGACGACCCACATTAAGTGTCACTCAGAAGAACGAAAGCACATGTGTACATATTGTGGTAACTCCTTCAAGCGTGCCGAGCATCTAAAAATTCACATAAGTGGGGTTCACTTGAAACAAAAGCCCTACGCTTGTGATTACTGTAATAAAACTTTCTCACAATGCGGCGATCGAAACATTCATATGAGGAGTCACACTcaGGACAAGCCTTATAATTGCCCCCACTGCCAAAAAgggtttaaattgcaaaaatcTCTTCGTGCCCATGAACGAATTCATACCGGTGAAAAACCATTTTCCTGTAAAGTATGCCAGAAGGATTTTATGACATACAATGCCCTTGCAATTCACACAATGAAACATTCAGACGACAAAAATAAAGAACTTACGGACAGAACTCTAGCCGAAATACAGAATGCGCTAGTCTCAACTGGGGCTATTGTATCACAGGAAATCTTACAAACTGGTAATGTTTCATCAGCAGCAACTACAGCATTACAAAAACCTCAACTTCTCGAGTATAATATAGAAGATACATGTGAAAACCAAGATAGTATCGCAAGTGAATGCGTCGAAATGTGA
Protein Sequence
MSIESKKFRPNAPYAATCVFRQNATLGLELNQATPSNSSISTSEQPPCENYTNYESPLSKRDNCLINTCKNLQKQNIEHTKALTEIIDILGKQQAMLSRQNVLLDRLSAKIFPEKTNFNIFPIDNSQQLDDIEEENKPQQELITHNDGLPQQICSDCMSHLSNISSFRRQCEKSQLILTAYFKGEIISNEPRVQEIEIVHVDNDGTVYKVEDDEGYENANENTSESELFTTCFLEIDDKSMVEERIESDCESTPLDEISNEGLVLGIMENLPSDEKSSLQEQNLEIKKNEPAPVKSAILMCNKCRMIFNNSIKLEKHLTCCDSMKCSVCNKTLMNKKELLAHFKEYHAQDGRCVCPICYRDFASVSNRNSHLQSHNKLNSFKCDICDQGFRSKVYLSKHKKHVHTTGNYECSMCLQRFENKAKFHYHIRSHSPNKKYQCKYCDKSFMQKHHLSNHERIHTGLKPFLCSICGKGFKQECNLKLHMRTHTGVKPYVCSVCGKDFAQRSSYVMHMRHHSGNRPYQCEVCGKNFIQKSTLTVHLRTHTGERPYKCDQCDRAFVQAHQLKYHKYSAHNGPPPTSRKYFGTGANENGQQNNSNPSYSCPLCSKTFKIPSSLTTHIKCHSEERKHMCTYCGNSFKRAEHLKIHISGVHLKQKPYACDYCNKTFSQCGDRNIHMRSHTQDKPYNCPHCQKGFKLQKSLRAHERIHTGEKPFSCKVCQKDFMTYNALAIHTMKHSDDKNKELTDRTLAEIQNALVSTGAIVSQEILQTGNVSSAATTALQKPQLLEYNIEDTCENQDSIASECVEM

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00455354;
90% Identity
iTF_00455354;
80% Identity
-