Dlin057237.1
Basic Information
- Insect
- Dioctria linearis
- Gene Symbol
- lrrfip2
- Assembly
- GCA_963930735.1
- Location
- OZ005742.1:39901503-39917853[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.1e-110 1.3e-105 355.7 32.6 1 299 165 449 165 450 0.91 2 2 0.082 9.7e+03 -1.8 4.1 220 244 478 502 454 524 0.46
Sequence Information
- Coding Sequence
- ATGGCGGAATTAGTAGCTACAGTTATTACAAATCCAGATAAAAATtcagaaatatgtaaaaataacCAAAgtaatggaaataatgaagaaaataataatataaaaactatcAAAAGAGCAATATCTACTGCTACAAATAATACAGATGAAGAATTCGATTTTAGTGATAATGATTTTGTTGATTTTGAAAATCATAATGAAGAACCACAACCACCTCAAACAGTAGTGCCAAAAAATGATAATACAAAAGCAAATACAAGCGGCGAAGATATTAATAAAAGTAGCACACAAACTTATGATGACAAAGTAGTTCCTAAAAATAGCGTGAATAACGCCAATAATACTATCGTAACACCTAATATTAATGGAAGCAGTGGAAATTCAGAAAACAACGTGCTTAATGATTGTTGTGATAGCGATAACGATGTATTTTACAGTGATAATGACGAAAATGTGTTTATAGTTGATTTTCTGGGAAAAGCAAATGAAATTgCAGAGGCTAGACTGGCAGCGCGTCGACAAGCACGTGCGGAAGCGCGCGAAATACGAATGCGTGAACTGGAACGTCAACAGAAAGAACAAGAACAAAATGCAGATAGAGTGTTTGACATGCAAACAGCGGCTGGAATTGATCCTCTATCTAGATCTCGACTTACAATGTCAGGGAATTCTGGCCGAGGTACTTCAATGTCTTCACGACGAAGTAGTGAAGATTCCCTCGAGGAAGAAAGCAGAAGTTTGCGTGATATTAGACACGAACTTAAGGATGTTGAAGAGAGATTTAGAAAAGCAATGATAGCAAATGCACAACTAGACAATGAAAGAGCTTCACAATCGTACCAAATTCAATTACTTAAAGACAAATTGGAAGAAATGGAAGAAACATATGCCCAACTTCAGAGggaatataaagaaaaatgtcgTGATCATAACgctttaaaaagaaattatgataaattagatgaagaattaaaattaGTTCGTGGACAATTAGATGAAAGGGATACTCTAATAACTGAACAGGGTTTAGTTATAGTATTGGTAGAAAATGATGATGGCTCAGATGCCAGACGCGCTCTAGTCAGTATGGATAACGCACAACTATTAGGTTCTGTTCAAGGTTCATTagATGTACGACTTAGAAAGTTCACTGAAGAAAAACAACAACTCCAAAAAGAAGTCCAAAGTCTTCAACAGCAAATAAGTGACATAAAGACACAAGGGCGACGGGGCGGTTCTCTAAATGGTCCTTTAGGTTCTGAAGATGATTATGAAGCTCAGaGAGAAGCCAATAAACTCATAGCTGACTACAAATATAAACTTCAAAAAGCTGAACAAGAAATAGCTAGTCTACAAGCCAGTTTAGCGAGATCTGAAACGCAAGTTATTAGATATAAAAGCACAGCAGAAGCTGCCGAAAAAGCCGAAgctgaattaaaaatagaaagacgAAAACTTCAACGCGAGAATCGTGAAGCAATGGAACGCTTAGAAGAGCTGGAAACAACTAATAATCACCTATTGAAACGCTTAGATAAACTAAAGAACGCGAAAAGTGCATTACTCAAAGACCTCTGA
- Protein Sequence
- MAELVATVITNPDKNSEICKNNQSNGNNEENNNIKTIKRAISTATNNTDEEFDFSDNDFVDFENHNEEPQPPQTVVPKNDNTKANTSGEDINKSSTQTYDDKVVPKNSVNNANNTIVTPNINGSSGNSENNVLNDCCDSDNDVFYSDNDENVFIVDFLGKANEIAEARLAARRQARAEAREIRMRELERQQKEQEQNADRVFDMQTAAGIDPLSRSRLTMSGNSGRGTSMSSRRSSEDSLEEESRSLRDIRHELKDVEERFRKAMIANAQLDNERASQSYQIQLLKDKLEEMEETYAQLQREYKEKCRDHNALKRNYDKLDEELKLVRGQLDERDTLITEQGLVIVLVENDDGSDARRALVSMDNAQLLGSVQGSLDVRLRKFTEEKQQLQKEVQSLQQQISDIKTQGRRGGSLNGPLGSEDDYEAQREANKLIADYKYKLQKAEQEIASLQASLARSETQVIRYKSTAEAAEKAEAELKIERRKLQRENREAMERLEELETTNNHLLKRLDKLKNAKSALLKDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00454810;
- 90% Identity
- iTF_00454810;
- 80% Identity
- -