Dfeb003244.1
Basic Information
- Insect
- Dilophus febrilis
- Gene Symbol
- -
- Assembly
- GCA_958336335.1
- Location
- OY284468.1:31805708-31806430[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 5 0.024 1.4e+02 3.1 0.0 23 43 15 35 2 44 0.82 2 5 0.00047 2.8 8.5 0.0 24 52 44 72 40 74 0.87 3 5 0.01 62 4.2 0.0 23 45 71 93 64 100 0.85 4 5 0.0019 11 6.6 0.0 23 46 99 122 95 129 0.86 5 5 0.97 5.8e+03 -2.1 0.0 24 43 156 175 152 180 0.74
Sequence Information
- Coding Sequence
- ATGaaagagaaaaataaaaataaaaaagatcaACCTTTAATTAAACCATTCGCATGTGATGTATGCACAAAAACATTTACACAAAAGGGTAATTTGGAAAcccataaatatattcatatgaaaattgaaCCATTTAAATGTGATGTTTGCCATAAGGGATTTCGGCAGAAGGGAAATTTGAAAACCCATCGAAATATACATGATAATTATAAACCATATGAAtgtaaattatgtaaaaaatcattttctcAAATGGGTAATTTAAAAACGCACCTGTACACACACGTCAACTATAAACCATTTCAATGTAAAATATGCTCAAAATCATTTACGCAAAAAGGtaatttacaaaatcatttatttgtaCATGTTGATGCAACGCCCTACGAATGCCTGTACTGTCAAAAGAAATTCAAAAAAGAAAGTGCATTAAATTATCACATAAAACATCATAATCCCGTTAAACCATTCCCATGCGGTATGTGTACGGATAGTTTTGTCGATCGTTACTCATTGAAACGACACGagaaaaaacattcaaaagaTAAAAACGATTGTATTACGGAGATCGCAATGAAATTGGAATACGAACAACCGTATGGAAATTCGTTACAAAAtcaacagcagcaacagcagcagcagcagcaacaacaacaacaacagcaacaacaacaacaacaccaccaACATCAACCACAACAAATGATTACCCATCATCAATAA
- Protein Sequence
- MKEKNKNKKDQPLIKPFACDVCTKTFTQKGNLETHKYIHMKIEPFKCDVCHKGFRQKGNLKTHRNIHDNYKPYECKLCKKSFSQMGNLKTHLYTHVNYKPFQCKICSKSFTQKGNLQNHLFVHVDATPYECLYCQKKFKKESALNYHIKHHNPVKPFPCGMCTDSFVDRYSLKRHEKKHSKDKNDCITEIAMKLEYEQPYGNSLQNQQQQQQQQQQQQQQQQQQQQHHQHQPQQMITHHQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00451334;
- 90% Identity
- iTF_00451334;
- 80% Identity
- iTF_00451334;