Basic Information

Gene Symbol
Zfa
Assembly
GCA_947459985.1
Location
OX381608.1:9246389-9254884[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 22 0.005 0.41 11.7 1.0 3 23 743 764 742 764 0.96
2 22 0.21 18 6.6 0.3 1 22 1147 1168 1147 1168 0.95
3 22 7.7 6.3e+02 1.7 0.4 1 22 1210 1231 1210 1233 0.82
4 22 0.0046 0.38 11.8 2.7 3 22 1244 1263 1242 1263 0.94
5 22 0.018 1.5 10.0 0.2 3 23 1314 1335 1312 1335 0.96
6 22 0.0038 0.31 12.1 3.5 1 23 1341 1364 1341 1364 0.95
7 22 0.13 11 7.3 0.0 1 23 1390 1413 1390 1413 0.90
8 22 0.019 1.6 9.9 3.4 1 23 1418 1440 1418 1440 0.97
9 22 0.0089 0.73 10.9 0.2 1 23 1446 1469 1446 1469 0.95
10 22 0.0024 0.2 12.7 1.3 1 23 1482 1504 1482 1504 0.97
11 22 0.00018 0.015 16.2 1.8 1 23 1557 1580 1557 1580 0.97
12 22 0.0049 0.4 11.7 1.7 1 23 1640 1663 1640 1663 0.96
13 22 0.0024 0.2 12.7 2.1 2 23 1690 1712 1689 1712 0.95
14 22 0.089 7.3 7.8 0.1 2 23 1718 1740 1717 1740 0.93
15 22 0.01 0.83 10.8 0.2 1 21 1784 1804 1784 1805 0.95
16 22 0.00043 0.035 15.1 1.0 1 23 1815 1837 1815 1837 0.93
17 22 0.00012 0.0094 16.9 0.3 2 23 1932 1954 1932 1954 0.93
18 22 4.1e-07 3.3e-05 24.6 1.4 3 23 1961 1981 1960 1981 0.98
19 22 0.057 4.7 8.4 0.2 1 23 2000 2022 2000 2023 0.95
20 22 0.19 16 6.8 0.0 1 23 2045 2067 2045 2067 0.97
21 22 0.028 2.3 9.4 0.6 1 23 2073 2096 2073 2096 0.95
22 22 0.00015 0.012 16.5 0.5 1 23 2104 2127 2104 2127 0.97

Sequence Information

Coding Sequence
ATGAATGTGAATTGTGATCGTGTTTGTAGACTGTGCTTGTCATCTCGAGGCGAATTACTGGCGATTTTTCCTACCACCAGTTCGGATGACTCGGAACCTCCCGTCCTCGCTTCGAAAATCAAGGATTGTGTGTCCGTTGAGATAAATGAAAATGACGACCTGCCAACTAATGTCTGCAGGAAGTGCATGGACAATGTCAATAACTGGCATATATTTAAAAATGTGTGTGAAAGGACACAAAACAAACTACAGTCTCTTAAAGATGGCAGCCAACTAGAAGAGGTAAAAATTAAAAGTGAGCCTCTTTCTGATGAGGCTTATGATGATGGAGTGGTCATTGATGGCTCATATCCTGGCATTGAGAATGCTGCCTTGTCAAACAAAATGCAACCTGAAGGTCCCCCAATCTTGGCTTCATTGGGTCTCACACCAAGGAGTGATAAGAAATGTGTAGATCCTCGAATGGATTGGCATCGGGTCCATGCAATATTGGACATGGTACAGGAGAATGAGGTGATTGATTCTCTGCAGACGAAGGAAGAGTGTGATGTTTTGCAGCATTCAGACCATGATTCTGACACTGAGGCTGAACTCCAACCAGACATTGATAATGATTTTGTTGATTGCAAAAGTGGCTACTTATGTAAAAATAAAAAACTGATGTCAAAAAATCCAAAACTATCGACATCTGTGAATAATGCTAGAATAAAAGAAGCTCTTAAACTGAGAAAACGTAAATCCGAATCTAGTAAACATTGTGCACGACCTAAAAATGCTTGGCAGTTGTTATTCACTGATGACCTACTAGAATTGATTGTTGCTTCTACTAATGAAAATATTGTCACAAATGAGAAAGGTTTCTCGGAGACAACTAGCGTCAGCGAAATTAAAACGCTTATTGGTATTCTGTATTTGCATGGCATAATGAGGCCGACACATCAGAAATGTAGTGAACTTTGGAATGTTGAATGTGGTGTACCTTGTATTAGAAATGTCATGAAATACGAAAGGTTCAAATTCCTGCTTCAAAACATCAGTTTTGATAAAGAGGACGACGACAGCATTATTCAGTTCGACATAATGAAGCGCATGCGTAAAGTATTTGAAATCTTCGCCATGAATTGCAGAACATCTCACGAGATCGAGAATGTTGCGGTTATTGATGAGATCATCGTGCCAGTTTATGGACCTTGCCCGTTTCGATATGATATTGATAAGAAACCGCTGAAGCGGGGTATAAAAATGGTATTGCTCGTCGATTCATCTACATTCTATATGAGTAATTTAGATATCATTACTGATCCTTATTTTGGCGCTGAAGAAATAACCAAAAAGTTGGTGCAGCATTTGGCTGGAACTGGTAGATCAGTTGTTATGGACAGTTGGTATACATCTGCTAGATTAATGGAGAGCCTCAGAAATGAGTACCAGTTGTATTCTATCGCAGCTGTGAGTCCAAAAAGTGATATGATTCCACCTCTGTTCCTTTCGCAATATAGGAAGTGTCATACATTCATGTCTGGATTTATTGATCATGAAGTATCTCTCACATCTTATGTTAATTCTGAAGGAAAATCAGTAAATGTATTAACTAATGACCCTAGATATTACAGAAAAGGTCATATAAACCACACTACAGTTGTAACAGTGTATAAGAAGAATCAGTCTGCTGTAGAAGTTGTTGATGTTCTTATGAACTACTATACTACTATGCAACACACAAATGATTGGACATTGTCTTTATTCTTTGCACTGCTAAATATTGCTTCAGTGAATGCACAGGTCTTGTGGTGCTCTCAAAACTCAAATGTTACACAGCGTCGCTTGTTCATCAGAGATTTGGCTTTAAGCCTATTGGAACAAGATGAGGAACGTATTTTAATATCTCCTATACATGATATAGAAGATAGAAAAAATAAATATTCCGTTGGTCAAAGTAATATGCAACCTTATTATAAGAATAGGAGAAGATGCAAAATATGTGTGAAAACTACTAAACGCGATAGGAGAACTAAACAGTTTTGTGTCAATTGGAACTATTTCGCATTTTGTCGTAAATTTCAGGGAGCGGAGAGTGAAAATAATGAAGAAGAGGAAGAAATGAACGAGCCCGCTCAAACATTCCCGAAAATGCCTCACATGCCAGAGGTGTCTATTACGGTGATGAGGCCTACAGGTGAAACCCTGCACGCCCGCCAAGGCATTCACCAACTGGCCTCCAAAGACTGCCTCGTATGCGGTCGCTCCTACAGGTACTCGCACAACGCTCGCCGTCATGAACTTACTGCTCACAGCTTCGACAGATACACGAACAAAATAACCCCCAAGAAAACCCTAACTCACCTACAACCCAAATTCAGACCTAACCCATTCAACCCCAAAGCACGGATGATGCCGAATCCTATTAGTCATAAGATGCAATTTATGAACAAGAACATCCCATCGAAAATAATGCCTATCAACAAAGTAATAACGCCGCAGAAACCCATTCCAATAAAGACGTCAAAGACCCAACATAATAATTTACCTTATCCTCTACGCATTAAAGCACTTAAGGATTTACAAATAAAGAAAAAGGAGCCACAGATTTTAAAGACTTTGTTGACCTCTAAACCTGAAGTTCTGGTATCTGAACCTGAAATACTACATTCTGGTCCAGAAAGTCCAGAAACATTGATATCTGAGCCGGAAATTGCTTCTTTTCAAGTTGAAGCTATTCTATCAGAGCCCGACCCAGATGCGTACGAACCACAACAAGTCGATGAAGAAGTCGATGGAGAAATGCACAACAATCAAAATTATGACACAGTTGACATGGACTCTGACAACGAAATTGAAATAGCTCGCCAGCAAGGTATTGAACAAGACGGTGAGGAAAACGCTGACGAAGAAGAGAATATCGAACAGTGTGATGACGAAAATAATATGGAAGGCCAAAGTGAAAATGAAAAAGATTGTAATGATGATACAGCAGAGAGTCAAGAAAACATGGAGGGGGAGGATGGTATGAATATAAAGGCTGAGAGTGATATGAAGGACGCCGAGGAAGGCCAAGAGGAAAGAGACGATGAAGTAAATGATATGAACCATGACGAAGAAGGAAACGTAGAAGATGACGACGACGGCCTCCCCATATCTTTGGCGCCAGTCGTTGAAATAAATGAGGATCTGCAAGTTAACTCATTTAACAGTGTAATAAATGAAGAGGAACTTGACGAAACCGCCGATCCCAATGAAACCATTGATGACGATGATCAGGTCAAAGAACTCGACCCTGACAAAACATATGTTACTAAAACCCAAAGAGACTTCATTCACAAATACCGTGACATAATTCAGCAAATCAATACGAAACGTTGTTTATGTTGCGACCGGGAACATCCACGTAGAAAAGCTGTTATACAACACTTGCAGAAAAATGGACACAAAGTGCCAAAACACACGTGCTACAACTGTGTGATCACGTTCGGACATATTGGCGCTCTACTCAGCCATATGCGGTCGAATTCTTGCACTAACTTGTGGAAGATTATTTACAATGAAAATGGAATTACTGATGATTTGGTTCTGGAAAATGAGCCGAAGGAGGTCAAGGTTCAATATAAAGATATTTTCAATGCCAGATCTTACGCGTGCAAACTCTGCCCAGCTAAGTTCCAACTGAAACAGTTTATAATGAAGCATGTTTTAGACACGCATGAAGATGGACAATCCAGGGTGGCGCTGTTTTGTGTTCACTGCCGTTCTAGGTTCAAAGATAAAAGTTTACTGAAGAAACACATTCGTAAAGGCGAATGTACAGTTTATATTGCTTGCGATTTGTGCATAGAAAAGTTTGGAAACATGCAGGACTTCAATGACCACGCTTTAGCTATTCACGCTGGTAGTTTCGATCAGTCAGATAATCCGAGTAAATGTGTTGATGGTCGACCAACTGACTGTCCATTGTGCGGAAAGAAAAACAGCAGCTATCCGAATTTGGTCAAACATTTGAAGATTATACACTGTGAGGAGACACCTCATTACTGCCAGCATTGCGACTCCAAATTCGAACAAGCTACTGATCTTAACAAACACATTTACATGGAACATTCTGACAGAACGTTAGGCATGTCGACTGCTGAACCGGATATGTCGATTGTCAAGGAAGAAGCTGAGGAGTACCATTATTCATGTACGGAATGCAATGCCATATTCGAAACTGTCGACGCCTGGACTGATCACCAAGTGGCCGAACATAATCAAGTGGCCCATCATTGCGACCAATGTGAAAAGAAATTCTTGCGGCCTTCTGAGCTAGCAGAGCATAAGAACACTCACTTGAGAGTCAAGTTCTATCCTTGTAGTGTCTGTCCCAACTCATACAGCACTCCGCAGAAACTGTCTGAACATGTCCAGCAGTCACATCCAGGTTTAGGTTCAGCTGCGACCGCTGAGACAGATTTTTTCTGCGACATTTGCATCAGATCATTCAAAAGTCGCCAAGCTTATTCAAATCATATGCGTATTCACGCTAAAGTACCAACCACTAACAGGAAACCAGGGGAAATAGGAAAAGGACCGATAAGTTTTGCACCTCAAATTATTGGAAAACCTATTAAACAATATTCAATGGTTCAACCTGGTTTTGTCGCTTTTAAACCAAATTACAACATTCCTAACGCCCCATATTCATGTGACATTTGTGGGAAAGGATTTATGCATAAGAAGAATATATGGAAACACAAGAAGGTTTTGCATGCCGATATTTTAGTTGACAGACATGATAGTGAAGAGAATACTATGCAGGCTTCCACAGAAGAGGACGAGTTCAATCCTGATGAAAATGGCGCCATTCTCTCAACGCCACAATTTGATAGTTTTAACTTTACAAACTTCCCAAACAATGCACAACAAACGCCGCAAGAAGCAATGCCTTACTCGTGTGAGCTATGCTTCAAACGATTCCCACTTAGGACGAGTTTGTGGAAACACAAGCGTGCTAAACATGGTATTATAAATGCTAGTGCTAGCGGTAGTAACGATAATACGACGCAATCGGCTGGCGGCGAGGGCAGTAGTAGATCAAGTTGCACTATATGCAGGATCACGTTTTCTGATAAGAAGTCTTATTATCGCCACCGAAAGAATGTCCACAAATCCACCGTTCAAATGTGCAAAATATGTGGTAAACCCTTAAACTCCACTTTGGAATTATACGAGCACTTGAAGGCCGCCCATGCAAGGGAATTATTGGGCTATAACGCCAACCAAGGCTCCAGTAAATCACAAGAAATGAACCAAGAAATTGAACCTGATTATGAAAATGATCAGGAGGCTATCGATCCCAGCGTCGATTATCAAGCGCGTTACCCATGCGATACTTGTGGCAAACAATTTGTGGGTTTACTAGCATTGCAAAACCACCAATGCATCAATCAGGTACCATCACAGCCACAAACATTTGATTGCGAGATTTGTCACAAGAGTTACACTTCAATATCTGCGTTAAAAAGTCATCGCGGGTGGCATTTGCGTTCGCCCGATGGGAAAGCAGCCGCGAACAATAGCGGACTTTGGATGCCACAGCACAAAGTTACTAGCAAGATCAGTAAACATGAAGTCATTGATCCGTCACAACTTGCTAAGGTCACACACACTTCCGTTCCTTCTCCCGCTCCCTCTACTGCTGCCGTAGCGAAGCGAAGATTACCGCCGGAGGTTGAAGTGACAGTTGTGAATCCAAACAAGAAATTGCGCTCTGACGATTCGGTTGAGTTAGATCAGCAAAATCCTGGTTCACTCGAGGATAGGTACTGTACAATTTGTGACAAAGAATTTACAAAACGAGCGGCATATCAGCGCCACATGGATGAGGTGCATCAACCGAACTCCGTGTTTTGTCCGGTTTGTGATAAGAGTTTCACAAGGAAGTCTACATTACTCATTCATATGAAAAAACACTACGAGAGTGGTGAGGGCAGTTCGTCTGCGACTGGTCAAGGGGATGATGACATGTATTCGTGCGATTTGTGCGGTGCCCAGTATGAAAATGATCAAGCGCTAAGAGCACACGTAGTGAGGCATCACGGAGAAGAAGAGTCAGGAGAAGAGAGTGATGACGGACATGTTCCCGTCGCTCCTCCCGGGGAATTTACATGTGCGCAATGTGGAGACGGTGTAGCAACCCCTAGAGACCTTATCGCTCATCGCACAATGCACGCTACTCCCACCAAATTCTTCTGTAACATATGCAAAGTGTACTTTGCGCGGGCGCTGGACCTGTCCTCGCACACTCGAGCGCGACATGCTGACAATGAAAAGGTATTCTTCCCATGTGCCATGTGTGACAGATTTTATATGAACAAGAAAAGTTTGCAGCGGCACATTGAGACGGCTCACTGA
Protein Sequence
MNVNCDRVCRLCLSSRGELLAIFPTTSSDDSEPPVLASKIKDCVSVEINENDDLPTNVCRKCMDNVNNWHIFKNVCERTQNKLQSLKDGSQLEEVKIKSEPLSDEAYDDGVVIDGSYPGIENAALSNKMQPEGPPILASLGLTPRSDKKCVDPRMDWHRVHAILDMVQENEVIDSLQTKEECDVLQHSDHDSDTEAELQPDIDNDFVDCKSGYLCKNKKLMSKNPKLSTSVNNARIKEALKLRKRKSESSKHCARPKNAWQLLFTDDLLELIVASTNENIVTNEKGFSETTSVSEIKTLIGILYLHGIMRPTHQKCSELWNVECGVPCIRNVMKYERFKFLLQNISFDKEDDDSIIQFDIMKRMRKVFEIFAMNCRTSHEIENVAVIDEIIVPVYGPCPFRYDIDKKPLKRGIKMVLLVDSSTFYMSNLDIITDPYFGAEEITKKLVQHLAGTGRSVVMDSWYTSARLMESLRNEYQLYSIAAVSPKSDMIPPLFLSQYRKCHTFMSGFIDHEVSLTSYVNSEGKSVNVLTNDPRYYRKGHINHTTVVTVYKKNQSAVEVVDVLMNYYTTMQHTNDWTLSLFFALLNIASVNAQVLWCSQNSNVTQRRLFIRDLALSLLEQDEERILISPIHDIEDRKNKYSVGQSNMQPYYKNRRRCKICVKTTKRDRRTKQFCVNWNYFAFCRKFQGAESENNEEEEEMNEPAQTFPKMPHMPEVSITVMRPTGETLHARQGIHQLASKDCLVCGRSYRYSHNARRHELTAHSFDRYTNKITPKKTLTHLQPKFRPNPFNPKARMMPNPISHKMQFMNKNIPSKIMPINKVITPQKPIPIKTSKTQHNNLPYPLRIKALKDLQIKKKEPQILKTLLTSKPEVLVSEPEILHSGPESPETLISEPEIASFQVEAILSEPDPDAYEPQQVDEEVDGEMHNNQNYDTVDMDSDNEIEIARQQGIEQDGEENADEEENIEQCDDENNMEGQSENEKDCNDDTAESQENMEGEDGMNIKAESDMKDAEEGQEERDDEVNDMNHDEEGNVEDDDDGLPISLAPVVEINEDLQVNSFNSVINEEELDETADPNETIDDDDQVKELDPDKTYVTKTQRDFIHKYRDIIQQINTKRCLCCDREHPRRKAVIQHLQKNGHKVPKHTCYNCVITFGHIGALLSHMRSNSCTNLWKIIYNENGITDDLVLENEPKEVKVQYKDIFNARSYACKLCPAKFQLKQFIMKHVLDTHEDGQSRVALFCVHCRSRFKDKSLLKKHIRKGECTVYIACDLCIEKFGNMQDFNDHALAIHAGSFDQSDNPSKCVDGRPTDCPLCGKKNSSYPNLVKHLKIIHCEETPHYCQHCDSKFEQATDLNKHIYMEHSDRTLGMSTAEPDMSIVKEEAEEYHYSCTECNAIFETVDAWTDHQVAEHNQVAHHCDQCEKKFLRPSELAEHKNTHLRVKFYPCSVCPNSYSTPQKLSEHVQQSHPGLGSAATAETDFFCDICIRSFKSRQAYSNHMRIHAKVPTTNRKPGEIGKGPISFAPQIIGKPIKQYSMVQPGFVAFKPNYNIPNAPYSCDICGKGFMHKKNIWKHKKVLHADILVDRHDSEENTMQASTEEDEFNPDENGAILSTPQFDSFNFTNFPNNAQQTPQEAMPYSCELCFKRFPLRTSLWKHKRAKHGIINASASGSNDNTTQSAGGEGSSRSSCTICRITFSDKKSYYRHRKNVHKSTVQMCKICGKPLNSTLELYEHLKAAHARELLGYNANQGSSKSQEMNQEIEPDYENDQEAIDPSVDYQARYPCDTCGKQFVGLLALQNHQCINQVPSQPQTFDCEICHKSYTSISALKSHRGWHLRSPDGKAAANNSGLWMPQHKVTSKISKHEVIDPSQLAKVTHTSVPSPAPSTAAVAKRRLPPEVEVTVVNPNKKLRSDDSVELDQQNPGSLEDRYCTICDKEFTKRAAYQRHMDEVHQPNSVFCPVCDKSFTRKSTLLIHMKKHYESGEGSSSATGQGDDDMYSCDLCGAQYENDQALRAHVVRHHGEEESGEESDDGHVPVAPPGEFTCAQCGDGVATPRDLIAHRTMHATPTKFFCNICKVYFARALDLSSHTRARHADNEKVFFPCAMCDRFYMNKKSLQRHIETAH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00017541;
90% Identity
-
80% Identity
-