Doo006652.1
Basic Information
- Insect
- Dicycla oo
- Gene Symbol
- clz9
- Assembly
- GCA_948252095.1
- Location
- OX411727.1:4584872-4586860[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 3e-07 9.6e-05 23.1 0.0 2 40 16 53 15 57 0.89
Sequence Information
- Coding Sequence
- ATGCCAAGACCAAAAAATAAGGAGCGGAAAATAGGAAAACACAAAAAAGAGGACATGATGTCAGCTTTACGAATGGTACAAACTGGTTACTCCATTAGGACAGCGGCAACAACCTGTAAAATTCCGTACCCTACATTGCGCCGTTACGTGAAAAACAATCGTGAACACGGTGATAACATATCACTTGTACCTAGGTATGATATTAATAAAGTGTTTACTGAAGAACATGAACAAATATTATTAAAATACTACAAGGACTGTGCACTAATGTTCTACGGTTTGACCGTCAAAGAATGTAGGAAGGTGgcgtacgaaatggcaaagcgtaatggcattaaaataccaagctcatgggaaagagatcaattggcaggtttggaatggtttcgtttcttcaaaaaaagacatcctgatatttcggtgaagaaaccagaagctgtaagtctcgcacgagctacctcatttaaccgtgagacggtggcaattttttttaataatttggaagagttgctgaaacgggagcctagattcgcggatggaactcgaatattcaaccttgacgaaaccggcacaaccaccgtccagaaacctcagaaagttgtggctccagcaagagctaaagtgggtaaagtaacaagtggagaaaagggcactcttgtcactacatgctgtatggttagtgctacaggccacgccctgccccctgctataatatttcctcggaaaaactttaaaaacttgatgatgcacggtgcacctccaggtagtttagggctcgcgaatcattcaggttggatgactagtgacttatttgtggcagtaatgaaacatttcattaagtgttcaagcacaacagcagaaaatccatgtctgctaataatggataatcatgagtcacatttgtccattgaggctctagatttagcaaaacaatctggtgttgtggttcttacgtttcatcctcacactactcacaaactgcaacccttagatgtgggtttgatgggccctttaaagacctattattattccgcacttgagtcatggatgctacagaacccagggaaaccagttacaatctacgagatagcaagattcattggtcatgcttatcccagatctatgactccactaaatatatcggcagctttcgcaaaatgtggaatttttccctttaataaggatattttctccgatgaagacttcatgccaagtagcgtaacagaCCGCCCCGTTCCTGTGGTGTCACAAAATTTGCCTGATGCTGAAGCTTCTGCTAGTCTCTACATGAATAGAAACAATAATCAACAGGATTCGACTCCTCTAGAGACACGTCGTACAAGTTATGATCCCGTTGTTACCCCTGATCGAGAAAGTCCATCTATACTATCGCAAGAACATCATAGTTACTACCAAAACGTTTCACCGCCAAAGAAAGTAGTTGAAGCATGCAAAGATGAAAATCATCAACCAAACTCCGAGCATATAATCACTCCAGTAATGTTCCGTCCTCCGCTAAAGGCTGGCCCTCGTACCAACAAACGAAAAGGTAGAAAACTGGGCAAAAGCATGATAGCAACGGACACACCAGAAAAGGAAAGAATAGCTGAGGAACGTACTGCAGCATTAAATAGAAAAGGTCTGCATAAAAGAAAAGTTCTACAAAAATGTGGAAATGAAATGCTTCCATCGACAAGTAAAATTAGAAAAACACCAAATAAGAGAAACAATAAAAGAAGAGTTGTACTGGACGAAGACAGTGAAACGAGTGAAGAGGAAGATATAATTCTTGAAAGTGAAACAGACCTAGAATCGGATGAGGAAGATGAGCAAATTATAGATGAAGATTTTGCTGATTTACAGCGTAAGCCAATGATTGACGAATATGTCATTGTATTGTTGCAATCTAAAAAACGGGTTGTTTATTATATTGCGAAGATTCTGGAAACGGAAAGTGATGATGAATATTGCGTTTCGTACCTAAAATGA
- Protein Sequence
- MPRPKNKERKIGKHKKEDMMSALRMVQTGYSIRTAATTCKIPYPTLRRYVKNNREHGDNISLVPRYDINKVFTEEHEQILLKYYKDCALMFYGLTVKECRKVAYEMAKRNGIKIPSSWERDQLAGLEWFRFFKKRHPDISVKKPEAVSLARATSFNRETVAIFFNNLEELLKREPRFADGTRIFNLDETGTTTVQKPQKVVAPARAKVGKVTSGEKGTLVTTCCMVSATGHALPPAIIFPRKNFKNLMMHGAPPGSLGLANHSGWMTSDLFVAVMKHFIKCSSTTAENPCLLIMDNHESHLSIEALDLAKQSGVVVLTFHPHTTHKLQPLDVGLMGPLKTYYYSALESWMLQNPGKPVTIYEIARFIGHAYPRSMTPLNISAAFAKCGIFPFNKDIFSDEDFMPSSVTDRPVPVVSQNLPDAEASASLYMNRNNNQQDSTPLETRRTSYDPVVTPDRESPSILSQEHHSYYQNVSPPKKVVEACKDENHQPNSEHIITPVMFRPPLKAGPRTNKRKGRKLGKSMIATDTPEKERIAEERTAALNRKGLHKRKVLQKCGNEMLPSTSKIRKTPNKRNNKRRVVLDEDSETSEEEDIILESETDLESDEEDEQIIDEDFADLQRKPMIDEYVIVLLQSKKRVVYYIAKILETESDDEYCVSYLK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00663013; iTF_01119275; iTF_00111595; iTF_00111596; iTF_00111597; iTF_00111598; iTF_00111599; iTF_00111600; iTF_00111601; iTF_00111602; iTF_00717698; iTF_00932434; iTF_01093981; iTF_00042565; iTF_00042566; iTF_00446070; iTF_01264424; iTF_01264418; iTF_01264419;
- 90% Identity
- iTF_00717698; iTF_00042566; iTF_00042565; iTF_00446070;
- 80% Identity
- -