Doo002971.1
Basic Information
- Insect
- Dicycla oo
- Gene Symbol
- -
- Assembly
- GCA_948252095.1
- Location
- OX411709.1:37213663-37216285[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 7.1e-16 2.3e-13 50.7 0.0 1 42 103 145 103 148 0.94
Sequence Information
- Coding Sequence
- ATGAGTTCCAATTCTAGCAAAACATCCCTAGTGTGTGACCTTTCTAATGGAGGCCAGTGGACCATGATGGAGCACTCGTATCCACGGTACACGAATGCGTGCATAGGCGCCGGCGCGCTACAGCAAGACCCCGGCATGTACATCAACAACGTCATCAACAACCAGCAAATGGACACCGATCTTAACTACGCGCAGAGCCTGGGCGTGGCGGGCCCGTCGCCCGGCTCTTCCTGCGTCGACGTGCAGGCCTCCGCCGAGCCCAATCAGACCCCGGCCCCCAAGCGGCGCCGCACTACCAACCCGCAATCCGAAGAAAACTTCCAGCGCGCGCTCGAGGCCGTGCGCTTCGGTGGCATCGGGTTCTGTAAGGCAGCGCGCATGTTCGGCGTCAACAACCGCACGCTCTGGTTGGAGTACAAGAAGAAGGGCTACCCCAACAACCGGCCAAGCATCAAGAGCAGGATCAAGCGCGAGCACACGACGCCCCCGCCCGAGCACAAAGACGAGGCGGCGCATCCCGACCAGCAGATGGCGCTGCTGTGCCCGCAGCATCAGGTACCGCCCGGCTTCCTCGAGCCCGGCGCGGCGCACGGCTTCCCGCTGCAGAGCGTGGCCCACAACTCGCCCCTCAACCTCCTCGGCGTGAACTTTAACTCGATGCAATAG
- Protein Sequence
- MSSNSSKTSLVCDLSNGGQWTMMEHSYPRYTNACIGAGALQQDPGMYINNVINNQQMDTDLNYAQSLGVAGPSPGSSCVDVQASAEPNQTPAPKRRRTTNPQSEENFQRALEAVRFGGIGFCKAARMFGVNNRTLWLEYKKKGYPNNRPSIKSRIKREHTTPPPEHKDEAAHPDQQMALLCPQHQVPPGFLEPGAAHGFPLQSVAHNSPLNLLGVNFNSMQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00039712;
- 90% Identity
- iTF_00071308; iTF_00726217; iTF_00745549; iTF_00373838;
- 80% Identity
- -