Acla002248.1
Basic Information
- Insect
- Agrotis clavis
- Gene Symbol
- -
- Assembly
- GCA_954870645.1
- Location
- OX940917.1:33388890-33391793[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 2.6e-16 3.1e-13 50.7 0.0 1 42 107 149 107 152 0.94
Sequence Information
- Coding Sequence
- ATGAACATGGAGAGCATCGCAGTAGATAACACGAACACGACCACAGCAGCCATACCAAACCAAGGAGGACAGTGGACAATGATGGAGCACTCGTACCCGCGATACACGAATGCGTGCGCCGGCACCGGAGCGCTGCAGCAGGAGCCGGGCATGTATATGAACAACGTCATCGATCCGCACATGGACGCCGATCTGCACTACGGACAGAACATGGGCGTCCCGGGCCCGTCGCCCGGGCCCTCGTGCGTCGATGTGCCAGCCGCCGCCGAGCCCACGCCGCCAGCCCCGCCCAAGCGGCGCCGCACTACCAACCCGCAGTCCGAGGAAAACTTCCAGCGCGCTCTCGAGGCCGTGCGCTTCGGGGGTATTGGCTTCTGTAAGGCGGCGCGCATGTTTGGCGTCAACAACCGCACGCTCTGGCTAGAATATAAGAAGAAGGGTTATCCTAACAATCGGCCCAGCATTAAGAGTAGGATCAAGCGCGAGCACACGACCCCGCCGCCCGAGCACAAAGACGAGCCGGCGCCGCCCGCGCAGCAGATGGCGCTGCTGTGTCCGCAGCATCAGCTGCCGCCCGGCTTCCTGGAGACCGGCGCGCCGCACGGCTTCCCGCTGCAGAGTGTGACGCACAACTCTCCTCTCAACCTTCTCGGCGTGAACTTTAACTCGATGCAATAG
- Protein Sequence
- MNMESIAVDNTNTTTAAIPNQGGQWTMMEHSYPRYTNACAGTGALQQEPGMYMNNVIDPHMDADLHYGQNMGVPGPSPGPSCVDVPAAAEPTPPAPPKRRRTTNPQSEENFQRALEAVRFGGIGFCKAARMFGVNNRTLWLEYKKKGYPNNRPSIKSRIKREHTTPPPEHKDEPAPPAQQMALLCPQHQLPPGFLETGAPHGFPLQSVTHNSPLNLLGVNFNSMQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00071308; iTF_00726217; iTF_00745549; iTF_00373838; iTF_00448941; iTF_01532947;
- 90% Identity
- iTF_01532947;
- 80% Identity
- -