Dsac011249.1
Basic Information
- Insect
- Diatraea saccharalis
- Gene Symbol
- litaf
- Assembly
- GCA_014843785.1
- Location
- JACGTY010002480.1:2748-6411[+]
Transcription Factor Domain
- TF Family
- zf-LITAF-like
- Domain
- zf-LITAF-like domain
- PFAM
- PF10601
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family display a conserved zinc ribbon structure [3] with the motif C-XX-C- separated from the more C-terminal HX-C(P)X-C-X4-G-R motif by a variable region of usually 25-30 (hydrophobic) residues. Although it belongs to one of the zinc finger's fold groups (zinc ribbon), this particular domain was first identified in LPS-induced tumour necrosis alpha factor (LITAF) which is produced in mammalian cells after being challenged with lipopolysaccharide (LPS)[2]. The hydrophobic region probably inserts into the membrane rather than traversing it. Such an insertion brings together the N- and C-terminal C-XX-C motifs to form a compact Zn2+-binding structure [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 3.9 9.8e+03 -2.5 0.0 62 67 11 16 8 25 0.48 2 2 1.3e-23 3.1e-20 72.8 24.3 2 70 70 136 69 136 0.90
Sequence Information
- Coding Sequence
- ATGACACATGACACGGTGCTGCGTAGCGCATGTCAAAGATTGTTGGGATCCCTCCTCTTCCTGTTTTTCTGGGAGCATACACGCTCCTTCGAACGCCGGAAGTCGAGGGACTTTGAAGCGGCGAGAGCGAGGATCTGTGAGGAGAGCCCAAAAGGTTACGCCTGGGGGATATTAAGGGAGCTTAAGACGACGTTGTTGTTAGGGCCGGAAAACACGATGACTACCTGTCCATTCTGCCAAGCCACGGTGCGCACCAAAATAAAACACACAACTACAACGCGCACTCATATGACTGCTGTGCTGTGCTCCTTCATATGCTGCTGTTGCTGCATACCATACTGCTGTGACTCAGCGAGGAATACTGATCACTACTGCCCCAACTGTCAAAAATACATTGGCACTTATGAGAAGTAA
- Protein Sequence
- MTHDTVLRSACQRLLGSLLFLFFWEHTRSFERRKSRDFEAARARICEESPKGYAWGILRELKTTLLLGPENTMTTCPFCQATVRTKIKHTTTTRTHMTAVLCSFICCCCCIPYCCDSARNTDHYCPNCQKYIGTYEK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -