Dsac029156.1
Basic Information
- Insect
- Diatraea saccharalis
- Gene Symbol
- -
- Assembly
- GCA_014843785.1
- Location
- JACGTY010004543.1:12496-16292[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 28 1.4 1.3e+02 4.1 0.3 1 23 54 76 54 76 0.94 2 28 2.1 1.9e+02 3.5 0.2 2 16 104 118 103 126 0.76 3 28 0.024 2.2 9.6 1.6 2 23 147 169 146 169 0.95 4 28 1e-05 0.00092 20.2 5.1 1 23 174 196 174 197 0.96 5 28 0.00063 0.056 14.6 1.0 1 23 201 224 201 224 0.96 6 28 1.7 1.5e+02 3.8 0.1 2 19 256 273 255 275 0.92 7 28 0.00063 0.056 14.6 2.9 1 23 330 353 330 353 0.94 8 28 8.3 7.4e+02 1.7 0.0 2 23 382 404 381 404 0.89 9 28 0.04 3.5 9.0 1.5 1 23 426 449 426 449 0.96 10 28 1.6e-05 0.0014 19.7 0.5 3 23 456 477 455 477 0.96 11 28 0.00031 0.028 15.6 0.7 1 23 482 505 482 505 0.92 12 28 0.0012 0.11 13.7 0.7 2 23 511 533 511 533 0.95 13 28 0.00099 0.088 14.0 2.3 1 20 537 556 537 558 0.93 14 28 0.0011 0.099 13.8 0.6 1 23 594 616 594 616 0.93 15 28 1.2 1.1e+02 4.3 0.0 3 23 645 666 643 666 0.91 16 28 0.073 6.5 8.1 0.2 2 23 687 709 686 709 0.95 17 28 0.0057 0.5 11.6 3.2 1 21 714 734 714 737 0.93 18 28 2.7e-05 0.0024 18.9 0.6 1 23 742 765 742 765 0.97 19 28 0.00041 0.037 15.2 0.4 2 23 768 790 768 790 0.96 20 28 0.00012 0.01 16.9 1.7 1 23 872 895 872 895 0.98 21 28 1.5 1.4e+02 4.0 0.3 2 23 923 945 922 945 0.94 22 28 0.005 0.45 11.8 0.8 3 23 969 991 967 991 0.94 23 28 9.7e-05 0.0086 17.2 0.2 3 23 998 1019 997 1019 0.94 24 28 0.033 2.9 9.2 5.4 2 23 1024 1046 1023 1046 0.94 25 28 0.00089 0.079 14.2 2.9 1 23 1051 1074 1051 1074 0.97 26 28 3.4e-05 0.003 18.6 4.2 1 23 1078 1101 1078 1101 0.97 27 28 0.00041 0.037 15.2 0.4 2 23 1108 1129 1107 1129 0.96 28 28 9.2e-06 0.00082 20.4 1.8 1 23 1135 1157 1135 1157 0.98
Sequence Information
- Coding Sequence
- ATGCCTCGGAGCCCATGTTATGATGCCAGTAATGAAAATTTCATCTTTTCAGATGAAAATGGGCCGAAAAAAGGGCAACATGCTAGTAGAAACAGAAGGCGAAATCTACAAATACTGTTCAACTACACATCAATGATACCTTTTAAATGGCGCGGAAAATTCATGTGCTTTTATTGTGGCGACGACATTGATGATTATATTGAGCTGAGGAAGCATACTAAAGCTCACGGGTTCTGTTCAGATAGAGACAGAGCTATCAAACTGGTCAAGTCTAGAGATACTGAAGTCAAAATTGACGTGTCAGCTATTACCTGTGAAATATGCAACGAGCCATTTGCTTACTTCGATGACGTTGTTTTTCATTTGACTTCGAAGCATCAGCTGTCTTATGACAAAAATGCTGACGTCACTATCACAACGTATCGCCTGTTGGATTTGAAATGTGTTTTTTGCGTTGAAATTTTCGACAACTTTTCCAAACTAATCAAGCACATGAATCACAGCCATCCAGTCAATTGCTTCGTGTGTCATGATTGTAATCGAAAGTTTAATAAAAAGAGGGACCTCGAGTCGCACATTCGTATTCACCATAGAACGGAATATAATTGTAAAAAGTGCTCTTTAAACTTTCCTAATAATGCAGCATTAAAAAAGCACAAGTCACGCGCTCATATATCTCTATGTAATATTTGTTTGCAACCATTTCCATCGTATACTAGAAAAGTTGATCACATAAAACAAGCGCATTTCGATAAAGAGCAACTGGAGTGTGGTTTCTGTCAGAAAAAGCTTAGCACGAAACTGGCACTGTTAATGCACGCAGGAAAATGCAATATGCAGCAATACAAAGACGATATGCTAACATATGAGGAGCCCGAAAATGTTGACGAAAGCACCAAGAAACCTTCTCTTGCAGTAATAAGGAACAATATCGCTTGTATAGTAAACATGTCCACTGCGCTGCCGTTCAAATATTTTATGAATAAATTTCGATGTTTCTACTGTCCCAAAGATTTTACCGAATGCGACGATCTCAAAAAACATACAGTTATGGAACATCCGTCCTGTAATAGCAAACTTAAATGTCTCAGACTTAGGAATAGGGAGCACGGCATTAAAATTAAAATTGATATTTCATCTCTTTCGTGCAAAATGTGTTATGAACCTATGCAAGATTTGGACACTTTAATAAATCATTTGATAGCAGAACACAAAGCGGAATACGACAAGTCTGTCGATAATAACATGCAACCGTTCAGATTGATAAGGGATAATTTCGCGTGTCCCTTTTGTGTTGAAGTGTCCAGATATTTTAGCACTTTATTAAAACATATAAGTACTTGTCATACGGATAATAGGAACATTTGTTCGTACTGCGGCAAGTCTTTCAGAACTGATCCAAGTTTACGCGCTCACATAAAGCAACGCCATAAGCCTAACAGTCATAAATGCAACGTTTGCGAAAAAGATTTTATTACGAGATATGCTTTACGTGACCATTTAGGTAACGCTCATGGTAGTAAAGTGGCTAAATGCCAATTGTGTTCAGAGAGGTTCACGTCCCAGTACGCGATGCAAAAACATTTGATCAACGTGCACGCTACAGGACATAAGTGCTCGTACTGCGGTAAAATGTTCACAAAAAACTCTTTTATGGTCAACCATGTACATGAAAATGCTCCTGCACATTACGGAGGGTGTCCCTCTGAGCGCAGAAGGAAAAACTTGAGAATATTATTCAACAGCACGACGGTGATGCCATTCAAATGGCGTGGACGATTCCTTTGCTTCTATTGCCCAAAAGGCTTTTCAGAATACGCTGAGTTAAAAAAGCATACGGTGTCTCATGGGTCGTGTACAACGAAAGATTACTCCTTGAAAATGATCAAGGGAAGTCACATAGAAATAAAAGTGGACGTTTCAGAAATAGCATGCGAGTTGTGCAAAGAGCCTTTCGGTGATTTGAGAGAGATCATTCAGCATTTGATCGGCAAACACAATATGGAGTACGATAAGAGTGTTGACATACCTTACCAATCATACAGATTAGTGGATATGCGGTGTTTATTCTGCGAAGAGAAGTTCAATTACTTCGGTTATCTGATAAGCCACGTCAACGTTGTACATCCCCAAAATTGTTTCATATGTGATGACTGCGGAGTCACGTTTAATAAAAAGCGAGATTTGGCGGTTCACTTTAGATGCCATCATAAACCTGGTGGATACCCGTGCGATCAGTGCCCGAAAGTCTTTGAAAACTTTTACAAGTTGCGATCTCATCAAAACAGTGTACATTATAGAAAATGTAAGAACTGCAATTTGCGTTTCGTGTCACTCGCTCTTCTGCAGAAACACATTTCTATCGAACATACTGAAGATGGCAGTATGAAATGCGAGTTCTGTGCCAAACAATGTCACTCGCAGCAAGGTCTGAAACAGCACAAAAGCAAATGTAGAGTGAAACTTATAGTTACCGATGAACCGCCAGACAAATTCTTCCCGACTGAAAATAATATGGAACCGCGAAAGAAGCAAAATGTAAAACAAATCAGAAAGAACATACAGTGCGTCCTGAACATGTCCACTGCTGTTCCCTTTAAATTTTTCTCCAAGTTTAGCTGCTTCTACTGTTCAGAGAAATTCGTTGATTTCGACGATTTAAAGAATCACACGCGAACCGACCATCCTGTCTGTGATTTGAAATCGAAATCTATGTGGAAGTGTAAAGGGGAAAGAGTTAGCGTTAAAATTGACATAAACTCCTTAAGCTGTAAAGTATGCGGGCTAGGGATGGACGATCTGAACTGTTTGATTGATCATTTGATTACCAAACACAACGCCAATTACGATAAATCTTTGACAGGTTGTCTTGAACCATTTAATATAATGAAAGACAATATACATTGTCCAACGTGCCCTGATAAAGTCTTCCGTTACTTCAGCACATTACTCCGACACATAAATTCTGAACATAGCAACAACAATAGGATATGCGATTTCTGTGGCCGCAGCTTCAAGAGTGTTGCCAATTTGAATGTCCATATATCCTATACTCATACAGGTTCTTGCGAGTGTGATATATGCGGTGCGAAATACAAAAATCGTTGGTGTTTGGCGAGGCATCGCGCCAAATGTCACAACGCCAAAGACTACAAATGCCCTAAGTGCCCTGAACAATTCCAGTCTCAGTATCACAAACAAAAGCACCTGATAAAGATCCACAATATAGGGCATAAGTGTGAGCAGTGTGGGAAGATGTTCACGCGGAATTCGTTCATGAAAGACCATGTCAGAAGGACGCATTTGAAAGAGAAGAACGTGGTTTGCTCAGTTTGTAATGAGAAGTTCTTTGATAATTATCTACTGAGGATGCATATGGTCAAGCATGAGGGGGAGAGAAGATTCACTTGTAATGTATGCGGAAAAGCTTTTCTGAGACGTAGCAATCTGCACTCGCATATGGAGATGCACAAGAAATACGGTCACGTCGTTGGTCTTTTGAATGAAATGGTTAATTAA
- Protein Sequence
- MPRSPCYDASNENFIFSDENGPKKGQHASRNRRRNLQILFNYTSMIPFKWRGKFMCFYCGDDIDDYIELRKHTKAHGFCSDRDRAIKLVKSRDTEVKIDVSAITCEICNEPFAYFDDVVFHLTSKHQLSYDKNADVTITTYRLLDLKCVFCVEIFDNFSKLIKHMNHSHPVNCFVCHDCNRKFNKKRDLESHIRIHHRTEYNCKKCSLNFPNNAALKKHKSRAHISLCNICLQPFPSYTRKVDHIKQAHFDKEQLECGFCQKKLSTKLALLMHAGKCNMQQYKDDMLTYEEPENVDESTKKPSLAVIRNNIACIVNMSTALPFKYFMNKFRCFYCPKDFTECDDLKKHTVMEHPSCNSKLKCLRLRNREHGIKIKIDISSLSCKMCYEPMQDLDTLINHLIAEHKAEYDKSVDNNMQPFRLIRDNFACPFCVEVSRYFSTLLKHISTCHTDNRNICSYCGKSFRTDPSLRAHIKQRHKPNSHKCNVCEKDFITRYALRDHLGNAHGSKVAKCQLCSERFTSQYAMQKHLINVHATGHKCSYCGKMFTKNSFMVNHVHENAPAHYGGCPSERRRKNLRILFNSTTVMPFKWRGRFLCFYCPKGFSEYAELKKHTVSHGSCTTKDYSLKMIKGSHIEIKVDVSEIACELCKEPFGDLREIIQHLIGKHNMEYDKSVDIPYQSYRLVDMRCLFCEEKFNYFGYLISHVNVVHPQNCFICDDCGVTFNKKRDLAVHFRCHHKPGGYPCDQCPKVFENFYKLRSHQNSVHYRKCKNCNLRFVSLALLQKHISIEHTEDGSMKCEFCAKQCHSQQGLKQHKSKCRVKLIVTDEPPDKFFPTENNMEPRKKQNVKQIRKNIQCVLNMSTAVPFKFFSKFSCFYCSEKFVDFDDLKNHTRTDHPVCDLKSKSMWKCKGERVSVKIDINSLSCKVCGLGMDDLNCLIDHLITKHNANYDKSLTGCLEPFNIMKDNIHCPTCPDKVFRYFSTLLRHINSEHSNNNRICDFCGRSFKSVANLNVHISYTHTGSCECDICGAKYKNRWCLARHRAKCHNAKDYKCPKCPEQFQSQYHKQKHLIKIHNIGHKCEQCGKMFTRNSFMKDHVRRTHLKEKNVVCSVCNEKFFDNYLLRMHMVKHEGERRFTCNVCGKAFLRRSNLHSHMEMHKKYGHVVGLLNEMVN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00006449;
- 90% Identity
- -
- 80% Identity
- -