Dmen047882.1
Basic Information
- Insect
- Diarsia mendica
- Gene Symbol
- -
- Assembly
- GCA_949316265.1
- Location
- OX438914.1:7109679-7114736[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 0.0025 0.35 13.0 1.4 1 23 85 108 85 108 0.97 2 20 0.5 70 5.8 0.1 2 23 135 157 134 157 0.94 3 20 0.001 0.14 14.2 0.9 2 23 180 201 179 201 0.96 4 20 0.0013 0.19 13.9 0.1 1 23 205 227 205 227 0.95 5 20 0.19 26 7.1 3.2 1 23 232 255 232 255 0.97 6 20 0.67 94 5.4 1.1 2 23 261 283 260 283 0.84 7 20 1.9e-05 0.0026 19.7 0.6 2 23 292 314 291 314 0.97 8 20 8.3e-05 0.012 17.7 1.3 1 23 320 342 320 342 0.98 9 20 0.01 1.4 11.1 2.7 1 23 348 370 348 370 0.98 10 20 0.00031 0.043 15.9 0.6 1 22 376 397 376 397 0.96 11 20 2.5 3.5e+02 3.6 0.2 1 23 460 483 460 483 0.90 12 20 0.5 70 5.8 0.1 2 23 510 532 509 532 0.95 13 20 0.0021 0.29 13.3 2.1 2 23 555 576 554 576 0.97 14 20 3.7 5.2e+02 3.0 0.7 1 14 580 593 580 602 0.86 15 20 0.014 2 10.6 4.1 1 23 607 630 607 630 0.96 16 20 0.12 17 7.7 0.9 2 14 638 650 637 660 0.81 17 20 5.2e-05 0.0073 18.3 0.4 2 23 668 690 667 690 0.96 18 20 0.0039 0.55 12.4 0.8 1 23 696 718 696 718 0.98 19 20 7.4e-06 0.001 21.0 2.2 1 23 724 746 724 746 0.99 20 20 0.0004 0.056 15.5 4.4 1 23 752 775 752 775 0.97
Sequence Information
- Coding Sequence
- ATGAAGTTGCAATCCGAGATGAAAGAACGACAGATTGCTTCAAAAGCAGAAACAGCACGCACAACATCAAAGACAGTtggaaagaaaaatattagcaGAGGCATACCTCAATCAAACTCCAATGAAGATGATAGTAAATCTAAAAAAAAGAGTCAAAAACAAAATGAGGAGGATTTATTTAAACTACGTTACAATATTAGAGAGATACTACTATGTAGCAATGCCACGCCTATTCGTAAGTATGATGTTGGATATGTGTGCTGTTTCTGTGATAACCAATATTCTAATCCCGAAGAACTAAAGACGCATACCATCACAGAACACGATGACAGTGATAAACTAGACTTTATGAAAGGACAGCGCGCCAGGACCTTCTTAATCAAGCTAGACATCACTGGACTCAAATGTACCTTGTGCGACACAGACATAGATTCAGATGTAGACCTCATCCAACATCTAAGGGACGAACATGGAAAGCCAATGTTCACAGATATAAAGAATTATATTATACCATTCAAGTTCGAAGACTCGACTCTTAAGTGCACCTTCTGCCCAAAAATATTCAACAGATTCAAAGTTCTGCAAGAGCACATGTATATACATTATAACAACTTCGTTTGTGGCGTATGCGGAACTGGTTTTGTTAACGAGAAAATGCTTACCACACATAGTGACAGCCATAAAGTGGGTGTTTTTGAATGCCGACACTGTTCCGAAGAATTTGACACTCCCAGAAAAAAGAAATATCACGAAAAGACTGTCCACTTGTTATCTTTAAACAAATGTGGGTATTGCGACGAAAAGTTTAAGTGGTACAGTCAAAAATGTGCTCATTTAGCTGCAGTACACGGCGTTGTTGTTATTGAACCGAAGCAGTGTAAAGCGTGTGATAAAGTCTTCCCTTCTAACTCCAAACTGCAAGTTCACGTCAGAAGGGATCACTTATTAGAACGCAGATTTAAATGTACTGAATGTGAGATGGAGTTCTTTACCAAAGAGTCCCTAAAGGACCACATGGTCAAACACACAGGGATCAAAAGGTTTTCTTGCAAGGTTTGCTGCAAATCCTACGGGCTGAAGAAGGCTTTGAGGGAGCATATGAGGATACATGAGAATGATAGAAGATTCAAATGCGAGATTTGTGATCAGGCGTTCGTGCAAAAGTGCACCTGGAAAGGGCATATGCGTGTTCAACGTAACGTGAACGCCAAGATTGAAAAGGATTGTCACAAAAAAGTGGCTCGCAAATGTACCCGAGGAAATCTCAAACAACCTGCTGAGCTCAAAATTAATGAGTTATTAAAACATAGAAGCAATATACATCTTATATTACAGTGTACCAACGCAACTCCTATACGATGCAAAGGGGGCATCGGGTATGCTTGTTGTTTTTGCGCAGACGAGTTTCCAGATCCATTAGACTTAAAAAAACATACTCTAGGAGGCCACGACGATAAAACTAAACTCAAATTCATGGTCGGCAAAATGATGTTCTCATTCCTTGTCAAATTAGACATCACTGATCTTACGTGCAAAATATGcgaaaataacataaattcaTTAGAAGAACTCATAGATCATTTAATCAAAATACACGATAAAAAGATGTACACTGACATTAAGAACCACATAATGCCTTTCAAGTTCGACAGTGACACACTAAAATGCATGTTCTGCCAAAACGTTTTCAATAAGTTCAAGAACTTGCAGCAGCATATGAACGTACATTACAGGAATTTTGTTTGCGAATTTTGTGATGctggttttataaataaacacatTCTAGCATGTCACGTTGAAGGCCATAAGATTGGTACATTCAAATGTGATATATGTACGAAAGTATTTGATACCCACAGGAAGAAGAAAAGTCACGAAAAATCCGTTCATGTACACGCGAACTTGCTTAGTAAATGCGGATACTGTaataagaaatttaaaaattacaaaCGAAGAGATGATCACTTAGTTGAGATCCATGGAGTTCAGCTTAAAGCCGTCAAATGCAATGCGTGTGACAAGAGTTTTGACAACAAAGGTGCTCTAACGATCCACACCAAACGAGACCACCTCATGGAGAGACGGTACAAATGTGCCCAATGCGAAATGAAATTTTTCGGATCTAACGAATTAAAACTCCACATGGTAAAACATACAGGAGTGAGAGAGTTCAAGTGTGATGTCTGCTTTAAATCCTATGGCCGGAAGAAGACATTAAAAGAGCATATGAGGATACATAACGATGATAGGCGGTTCAAATGCGAACACTGTGGTCAGGGATTCGTTCAAAAGTGCAGCTGGAAAGGACACATGAGGAATAGGCACGGCACATTAGTCTGA
- Protein Sequence
- MKLQSEMKERQIASKAETARTTSKTVGKKNISRGIPQSNSNEDDSKSKKKSQKQNEEDLFKLRYNIREILLCSNATPIRKYDVGYVCCFCDNQYSNPEELKTHTITEHDDSDKLDFMKGQRARTFLIKLDITGLKCTLCDTDIDSDVDLIQHLRDEHGKPMFTDIKNYIIPFKFEDSTLKCTFCPKIFNRFKVLQEHMYIHYNNFVCGVCGTGFVNEKMLTTHSDSHKVGVFECRHCSEEFDTPRKKKYHEKTVHLLSLNKCGYCDEKFKWYSQKCAHLAAVHGVVVIEPKQCKACDKVFPSNSKLQVHVRRDHLLERRFKCTECEMEFFTKESLKDHMVKHTGIKRFSCKVCCKSYGLKKALREHMRIHENDRRFKCEICDQAFVQKCTWKGHMRVQRNVNAKIEKDCHKKVARKCTRGNLKQPAELKINELLKHRSNIHLILQCTNATPIRCKGGIGYACCFCADEFPDPLDLKKHTLGGHDDKTKLKFMVGKMMFSFLVKLDITDLTCKICENNINSLEELIDHLIKIHDKKMYTDIKNHIMPFKFDSDTLKCMFCQNVFNKFKNLQQHMNVHYRNFVCEFCDAGFINKHILACHVEGHKIGTFKCDICTKVFDTHRKKKSHEKSVHVHANLLSKCGYCNKKFKNYKRRDDHLVEIHGVQLKAVKCNACDKSFDNKGALTIHTKRDHLMERRYKCAQCEMKFFGSNELKLHMVKHTGVREFKCDVCFKSYGRKKTLKEHMRIHNDDRRFKCEHCGQGFVQKCSWKGHMRNRHGTLV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00124504;
- 90% Identity
- -
- 80% Identity
- -