Dmen047883.1
Basic Information
- Insect
- Diarsia mendica
- Gene Symbol
- -
- Assembly
- GCA_949316265.1
- Location
- OX438914.1:7114797-7122919[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 27 0.012 1.6 10.9 0.2 1 23 70 93 70 93 0.96 2 27 0.016 2.2 10.5 0.1 2 23 125 147 124 147 0.96 3 27 0.26 37 6.6 3.6 2 23 170 191 169 191 0.97 4 27 3.7e-05 0.0052 18.8 0.0 1 23 195 217 195 217 0.98 5 27 0.7 98 5.3 2.0 1 23 222 245 222 245 0.89 6 27 0.0029 0.41 12.8 0.3 3 23 284 305 283 305 0.95 7 27 0.0018 0.25 13.5 1.0 1 23 311 333 311 333 0.94 8 27 0.0045 0.63 12.2 1.7 1 23 339 361 339 361 0.98 9 27 0.00053 0.073 15.1 0.2 1 21 367 387 367 388 0.96 10 27 0.012 1.6 10.9 0.2 1 23 453 476 453 476 0.96 11 27 0.016 2.2 10.5 0.1 2 23 508 530 507 530 0.96 12 27 0.26 37 6.6 3.6 2 23 553 574 552 574 0.97 13 27 7.2e-05 0.01 17.9 0.0 1 23 578 600 578 600 0.98 14 27 0.7 98 5.3 2.0 1 23 605 628 605 628 0.89 15 27 0.00064 0.089 14.9 1.1 3 23 667 688 666 688 0.95 16 27 6.4e-05 0.0089 18.0 0.9 1 23 694 716 694 716 0.97 17 27 4e-05 0.0055 18.7 1.4 1 23 722 744 722 744 0.98 18 27 0.00053 0.073 15.1 0.2 1 21 750 770 750 771 0.96 19 27 0.012 1.6 10.9 0.2 1 23 836 859 836 859 0.96 20 27 0.016 2.2 10.5 0.1 2 23 891 913 890 913 0.96 21 27 0.26 37 6.6 3.6 2 23 936 957 935 957 0.97 22 27 7.2e-05 0.01 17.9 0.0 1 23 961 983 961 983 0.98 23 27 0.7 98 5.3 2.0 1 23 988 1011 988 1011 0.89 24 27 0.00064 0.089 14.9 1.1 3 23 1050 1071 1049 1071 0.95 25 27 6.4e-05 0.0089 18.0 0.9 1 23 1077 1099 1077 1099 0.97 26 27 4e-05 0.0055 18.7 1.4 1 23 1105 1127 1105 1127 0.98 27 27 8.2e-05 0.011 17.7 0.6 1 23 1133 1156 1133 1156 0.98
Sequence Information
- Coding Sequence
- ATGTTACATTTTGGTACTCGCGACAAACTTACCAAGGCTAGTGAATTAGATGAAGATTATGAACCACCATGGATAAAAAAGGAAAGAAGGGAATCAAGAAGAAGGATCAATGAAACCGAACCAAAAATCACGAAGCAGCGCACAAATCTGAGAGAAATCTTTGCTTGCTCCAATGCTACACCCTTGGTCGGAGTTAATTATCAAGGATATATGTGTGGCTACTGTGACGATCAGTATCAAGACCCAGCAGATCTGAAGAAGCATACACGTGGCAATCATAAAGGAAACCTTTACAACGCAGAAATTCCAAAAACGTATAGAAGTAAAAATATACCAAATGAGTATGGAATGAAGCTAGACATAACTGATTTGCGATGTACGCTTTGCGATACTGACATAGACACATTAGAAAACTTGATGAAACATCTAGAAACGGACCACAAAAGGGTTATGCACTTCGACATCAAACAACATATCTTACCGTTCAAGTTTAGTGGTGATACCATGAAATGTTGTATGTGTCCAAGCTTTTTTCAAAAGTTCAAGAGTTTAGTAGAGCATATGCGCATGCATTATAGAAATTATGTCTGCGATGTCTGTGATGAGGGCTACGTCTACAAATCAAATCTCGGGGCACACATGGCCACACATAGAACAGGCGTCTTCAAATGTAGTTCGTGCCCTAAAACTTATTTGAATAATAAGAGGTTGAAGAGTCACGAATATCAAGTTCACGTTAATAAGGGTATGAATCTAAGGTGTGAATACTGTTGTGACAGATTTAGAAATGCTATGAGAAGAGATGAGCATTTGGCAGAAGTGCATGGTGTTAAACTGAAGATCGTCGATTGTCGTGCATGCAATAGGATATTTCCTAATAGAGACGCGTTAAGGGTCCACACGAGGCGAGATCATTTGATGGAGAGGCGGTTTAAATGTACAGAATGCGATAAGGCATTTTTCCAAGCAGCTGATTTAAAGTTTCACAAGGTAACGCATTCAAAAACCAGAGAGTTCCAATGCACTGTGTGTATGAAGTATTATAGTCGGATGACAACTTTAAAACAACATATGGAAATACATAGTGACGTTAGACGGTTCAAATGTGAGCGTTGCGGTCAAGCATTCGTGCAGAAAGCTAGCTGGAAAGGACATATGAAAAGTACTCGCGACAAACTTACCAAGGCTAGTGAATTAGATGAAGATTATGAACCACCATGGATAAAAAAGGAAAGAAAGGGTTCAAGAAGAAGGATCAATGAAACCGAACCAATAATCACGAAGCAGCGCACAAATCTGAGAGAAATCTTTGCTTGCTCCAATGCTACACCCTTGGTCGGAGTTAATTATCAAGGATATATGTGTGGCTACTGTGACGATCAGTATCAAGACCCAGCAGATCTGAAGAAGCATACACGTGGCAATCATAAAGTAAACCTTTACAACGCAGAAATTCCAAAAACGTATAGaagtaaaaaaataccaaatGTGTATGGAATGAAGCTAGACATAACTGATTTGCGATGTACGCTTTGCGATACTGACATAGACACATTAGAAAACTTGATGAAACATCTAGAAACGGACCACAAAAGGGTTATGCACTTCGACATCAAACAACATATCTTACCGTTCAAGTTTAGCGGTGATACCATGAAATGTTGTATGTGTCCAAGCTTTTTTCAAAAGTTCAAGAGTTTAGTAGAGCATATGCGCATGCATTATAGAAATTATGTCTGCGATGTCTGTGATGAGGGCTACGTCTACAAATCAAATCTCGGGGCACACATGGCCAGACATAGAACAGGCGTCTTCAAATGTAGTTCGTGCCCTAAAACTTATTTGAATAATAAGAGGTTGAAGAGTCACGAATATCAAGTTCACGTTAATAAGGGTATGAATCTAAGGTGTGAATACTGTTGTGACAGATTTAGAAATGCTATAAGAAGAGATGAGCATTTGGCAGAAGTGCATGGAGTTAAACTGAAGATCGTCAATTGCCGTGCATGCAATAAGATATTTCGTAATAGAGACGCGTTAAGGGTCCACACGAGGCGAGACCATTTGATGGAGAGGCGGTTTAAATGTACAGAATGCGATAAGGCATTTTACCAAGCAGCTAATTTAAAGTTTCACATGGTTAAGCATACAAAAACGAGAGAGTTCCAATGCACCGTGTGCATGAAGTCTTATAGCCGGAAGGAAACTTTAAGACAGCATATGGAAATACACAGTGACGTTAGACGGTTCAAATGTGAGCGTTGCGGTCAAGCATTCGTGCAGAAAGCTAGCTGGAAAGGACATATGAAAAGTACTCGCGACAAACTTACCAAGGCTAGTGAATTAGATGAAGATTATGAACCACCATGGATAAAAAAGGAAAGAAAGGGTTCAAGAAGAAGGATCAATGAAACCGAACCAATAATCACGAAGCAGCGCACAAATCTGAGAGAAATCTTTGCTTGCTCCAATGCTACACCCTTGGTCGGAGTTAATTATCAAGGATATATGTGTGGCTACTGTGACGATCAGTATCAAGACCCAGCAGATCTGAAGAAGCATACACGTGGCAATCATAAAGTAAACCTTTACAACGCAGAAATTCCAAAAACGTATAGaagtaaaaaaataccaaatGTGTATGGAATGAAGCTAGACATAACTGATTTGCGATGTACGCTTTGCGATACTGACATAGACACATTAGAAAACTTGATGAAACATCTAGAAACGGACCACAAAAGGGTTATGCACTTCGACATCAAACAACATATCTTACCGTTCAAGTTTAGCGGTGATACCATGAAATGTTGTATGTGTCCAAGCTTTTTTCAAAAGTTCAAGAGTTTAGTAGAGCATATGCGCATGCATTATAGAAATTATGTCTGCGATGTCTGTGATGAGGGCTACGTCTACAAATCAAATCTCGGGGCACACATGGCCAGACATAGAACAGGCGTCTTCAAATGTAGTTCGTGCCCTAAAACTTATTTGAATAATAAGAGGTTGAAGAGTCACGAATATCAAGTTCACGTTAATAAGGGTATGAATCTAAGGTGTGAATACTGTTGTGACAGATTTAGAAATGCTATAAGAAGAGATGAGCATTTGGCAGAAGTGCATGGAGTTAAACTGAAGATCGTCAATTGCCGTGCATGCAATAAGATATTTCGTAATAGAGACGCGTTAAGGGTCCACACGAGGCGAGACCATTTGATGGAGAGGCGGTTTAAATGTACAGAATGCGATAAGGCATTTTACCAAGCAGCTAATTTAAAGTTTCACATGGTTAAGCATACAAAAACGAGAGAGTTCCAATGCACCGTGTGCATGAAGTCTTATAGCCGGAAGGAAACTTTAAGACAGCATATGGAAATACACAGTGACGTTAGACGGTTCAAATGTGAGCGTTGCGGTCAAGCATTCGTGCAGAAAGCTAGCTGGAAAGGACATATGAAAAGTAAGCATGGTGAACTGGTCTGA
- Protein Sequence
- MLHFGTRDKLTKASELDEDYEPPWIKKERRESRRRINETEPKITKQRTNLREIFACSNATPLVGVNYQGYMCGYCDDQYQDPADLKKHTRGNHKGNLYNAEIPKTYRSKNIPNEYGMKLDITDLRCTLCDTDIDTLENLMKHLETDHKRVMHFDIKQHILPFKFSGDTMKCCMCPSFFQKFKSLVEHMRMHYRNYVCDVCDEGYVYKSNLGAHMATHRTGVFKCSSCPKTYLNNKRLKSHEYQVHVNKGMNLRCEYCCDRFRNAMRRDEHLAEVHGVKLKIVDCRACNRIFPNRDALRVHTRRDHLMERRFKCTECDKAFFQAADLKFHKVTHSKTREFQCTVCMKYYSRMTTLKQHMEIHSDVRRFKCERCGQAFVQKASWKGHMKSTRDKLTKASELDEDYEPPWIKKERKGSRRRINETEPIITKQRTNLREIFACSNATPLVGVNYQGYMCGYCDDQYQDPADLKKHTRGNHKVNLYNAEIPKTYRSKKIPNVYGMKLDITDLRCTLCDTDIDTLENLMKHLETDHKRVMHFDIKQHILPFKFSGDTMKCCMCPSFFQKFKSLVEHMRMHYRNYVCDVCDEGYVYKSNLGAHMARHRTGVFKCSSCPKTYLNNKRLKSHEYQVHVNKGMNLRCEYCCDRFRNAIRRDEHLAEVHGVKLKIVNCRACNKIFRNRDALRVHTRRDHLMERRFKCTECDKAFYQAANLKFHMVKHTKTREFQCTVCMKSYSRKETLRQHMEIHSDVRRFKCERCGQAFVQKASWKGHMKSTRDKLTKASELDEDYEPPWIKKERKGSRRRINETEPIITKQRTNLREIFACSNATPLVGVNYQGYMCGYCDDQYQDPADLKKHTRGNHKVNLYNAEIPKTYRSKKIPNVYGMKLDITDLRCTLCDTDIDTLENLMKHLETDHKRVMHFDIKQHILPFKFSGDTMKCCMCPSFFQKFKSLVEHMRMHYRNYVCDVCDEGYVYKSNLGAHMARHRTGVFKCSSCPKTYLNNKRLKSHEYQVHVNKGMNLRCEYCCDRFRNAIRRDEHLAEVHGVKLKIVNCRACNKIFRNRDALRVHTRRDHLMERRFKCTECDKAFYQAANLKFHMVKHTKTREFQCTVCMKSYSRKETLRQHMEIHSDVRRFKCERCGQAFVQKASWKGHMKSKHGELV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00446420;
- 90% Identity
- iTF_00446420;
- 80% Identity
- -