Dmen038635.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Diarsia mendica
Gene Symbol
-
Assembly
GCA_949316265.1
Location
OX438907.1:12540864-12554190[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 19 0.00012 0.017 17.1 0.1 3 23 134 154 133 154 0.97
2 19 1.1e-06 0.00016 23.6 1.2 1 23 160 182 160 182 0.99
3 19 6.9e-06 0.00097 21.1 2.7 1 23 188 210 188 210 0.99
4 19 6.4e-06 0.00089 21.2 2.5 1 23 225 247 225 247 0.98
5 19 3.1e-05 0.0044 19.0 1.1 1 23 262 284 262 284 0.99
6 19 6.3e-05 0.0089 18.0 3.1 1 23 299 321 299 321 0.98
7 19 4.4e-07 6.2e-05 24.8 1.5 1 23 336 358 336 358 0.99
8 19 0.0002 0.027 16.5 2.8 1 23 364 386 364 386 0.98
9 19 6.4e-06 0.00089 21.2 0.1 1 23 393 415 393 415 0.97
10 19 1.4e-05 0.0019 20.1 2.1 1 23 421 443 421 443 0.99
11 19 0.045 6.3 9.1 1.8 1 23 450 472 450 472 0.98
12 19 7.5e-07 0.0001 24.1 2.3 1 23 478 500 478 500 0.99
13 19 0.052 7.2 8.9 1.8 1 23 507 529 507 529 0.98
14 19 3.1e-06 0.00043 22.2 1.5 1 23 535 557 535 557 0.99
15 19 0.00058 0.081 15.0 0.7 1 23 564 586 564 586 0.99
16 19 3.4e-06 0.00047 22.1 1.9 1 23 592 614 592 614 0.98
17 19 0.0025 0.34 13.0 0.3 1 20 620 639 620 642 0.93
18 19 4.1e-05 0.0057 18.7 1.3 2 23 649 670 648 670 0.96
19 19 3.7e-06 0.00052 21.9 1.3 1 23 676 699 676 699 0.97

Sequence Information

Coding Sequence
ATGTTCGAACAGCAGATCAAGGCTGAACCCATGAGTTTCTACACATCTCATCAACACGTACACTCCGGTCCCCCAACACTATTACGGTCAGATCCAAGCCATGCATCCATCATAAACATGAACCAACATCACCAGACTCACCAAGAGGATTCTAAAGACAGCCTCATACAGCATCAAGTACAACATCAGCAAGATCTCATGGAACAACATCAACAACAACAGGAAATGCAACAACAAGATGACGAGCTGAGCTTCAAAGGAATGGACGACGATGGAGTTGATATGGATATGGACGGACGACAGTGTTCTCAGGGTATGGGAGTGGACATGGGATCAGTTCAAACTAAAATGGAAGTGTCGAATGGGGGTCAGTCGACGCCACGATCTAAACCACAGGCCTGTAAGGTCTGTGGTAAAGTTTTGTCGTCGGCTTCCTCTTACTATGTCCACATGAAGCTTCACTCAGGAAACAAACCTTTTCAGTGCACTGTGTGCGACGCAGCTTTTTGCCGCAAGCCATACCTAGAAGTGCACATGCGCACACACACAGGGGAGCGCCCCTTCCAGTGCGACCTCTGCCTCAAGCGCTTCACGCAGAAATCCAGTCTCAACACGCACAAACGCGTTCATACAGATGAGCACATGCGCGCGTTGATGGTGAAGGACCGGCCCTACAGGTGTGATCTCTGTCAGATGCGGTTCACGCAGAGCTCCAGCCTCAACCGACACAAGAAAATTCACACGGAGGAACACAGACGCGCGCTGCTGGCTAAGGATCGGCCATACCAATGCGGCATCTGCTATGTGAGATTCACCCAGAAATCAAGTTTGGGCCGGCACAGAAAAATACATACCGAGGAGCACAGACGAGCCCTGTTAGAGAAAGTGCGGCCGTACCAGTGCCACATCTGTTTTATGCGCTTCACTCAGAAGTCCAGCCTGGGACGACATGGGAAAATACACACTGAGGAGCACATCCAATCGCTGATCAACAAAGTGCGCCCCTATCAATGCGACATCTGTGACAAGCGGTTCACGCAGAAGTCCAGCCTTGGTACTCATAAACGTATACACACCGGGGAGCGGCCGTTCCAGTGCACCGTCTGCCTCAAGTCCTTCACGCAGAAGTGCGCGCTCAATTTGCACGAAAAAATACATACGGTGCAAGGGCGCCCTTTCGCGTGCGGGCAATGCCCGGCAGCGTTCGCCCGCCGCTCCAACCTGGACATTCACATGCGCACGCATACAGGCGAGCGGCCCTATCAGTGCGACGCGTGTCTGAAGCGCTTCACGCAGAAGTCCAGCCTCAATATACATAAGAGGACGCACACAGTCCAGGGCAGACCGTTCCAGTGCCTGTCGTGCCCCGCCGCCTTCACCTGCAAGCAATACCTGGAGATACACACGCGCACGCACACCGGCGAGCGGCCATATCAGTGCGACATCTGCCTGAAGCGCTTCACTCAGAAGTCCAGTCTCAACATCCACAAGCGGACGCACTCAGTGCAGGGGCGGCCCTTCCAGTGCCTGCAGTGCCCGGCCGCCTTCACCTGCAAGCAGTACCTGGAGATCCACAACCGCACGCACACCGGCGAGCGGCCCTACCAGTGTGACGTATGCCTCAAGAGATTCGCGCAAAAATCTACACTCAATATACACAAACGAACGCACACAGTGCAAGGGCGGCCGTACCAATGCATGGAGTGCCCGGCGGCGTTCACTTGCAAGCCGTACCTGGAGATACACATGCGTACGCACACGGGAGAAAGGCCGTTCGAGTGCGATGTCTGTTACAAACGCTTCACGCAGAAATCAACGCTCAACATTCACAAGCGAATTCATACCGGGGAACGTCCTTACGCTTGTGATATTTGTCAGAAACGTTTTGCTGTGAAGAGCTATGTAACCGCGCACAGATGGTCTCACGTGGCCGACAAGCCGTTGAACTGCGACCGCTGCTCCATGTCGTTCACATCCAAGTCTCAGTTCGCGCTGCACATCCGTACGCACTCCACCGGCTCCTGCTACGAGTGCAGCGTCTGCGGCCGTTCCTTCGTAAGGGACAGCTATCTAATAAGACACCACAACCGTGTCCACCGCGAGAACCACAGCAACGTGTCGGCCAACAGCATCGGCACCATCAACAGTGTTGCGACCAACACCAACAACAGCAACTTTGACTCGCCCGGCGTTTGTGACTTAAGCTTCGTTCCAATGGTGAATCGTTACATGACATCTCAGGGGACCCAAGTGTCAATGCAGGATACCAACAAAATGTCTGCGATGTCGCCACAGTCTATTGCGTCTATTTCGTCGCCCCCTCCTTCGCATACCCCCTCGCATACGCCCCAGCCCCAGATGTCTGGTCAGATGCATCTTGCAGACTGA
Protein Sequence
MFEQQIKAEPMSFYTSHQHVHSGPPTLLRSDPSHASIINMNQHHQTHQEDSKDSLIQHQVQHQQDLMEQHQQQQEMQQQDDELSFKGMDDDGVDMDMDGRQCSQGMGVDMGSVQTKMEVSNGGQSTPRSKPQACKVCGKVLSSASSYYVHMKLHSGNKPFQCTVCDAAFCRKPYLEVHMRTHTGERPFQCDLCLKRFTQKSSLNTHKRVHTDEHMRALMVKDRPYRCDLCQMRFTQSSSLNRHKKIHTEEHRRALLAKDRPYQCGICYVRFTQKSSLGRHRKIHTEEHRRALLEKVRPYQCHICFMRFTQKSSLGRHGKIHTEEHIQSLINKVRPYQCDICDKRFTQKSSLGTHKRIHTGERPFQCTVCLKSFTQKCALNLHEKIHTVQGRPFACGQCPAAFARRSNLDIHMRTHTGERPYQCDACLKRFTQKSSLNIHKRTHTVQGRPFQCLSCPAAFTCKQYLEIHTRTHTGERPYQCDICLKRFTQKSSLNIHKRTHSVQGRPFQCLQCPAAFTCKQYLEIHNRTHTGERPYQCDVCLKRFAQKSTLNIHKRTHTVQGRPYQCMECPAAFTCKPYLEIHMRTHTGERPFECDVCYKRFTQKSTLNIHKRIHTGERPYACDICQKRFAVKSYVTAHRWSHVADKPLNCDRCSMSFTSKSQFALHIRTHSTGSCYECSVCGRSFVRDSYLIRHHNRVHRENHSNVSANSIGTINSVATNTNNSNFDSPGVCDLSFVPMVNRYMTSQGTQVSMQDTNKMSAMSPQSIASISSPPPSHTPSHTPQPQMSGQMHLAD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00010401;
90% Identity
iTF_00007324;
80% Identity
-