Dmen015270.1
Basic Information
- Insect
- Diarsia mendica
- Gene Symbol
- -
- Assembly
- GCA_949316265.1
- Location
- OX438893.1:21409224-21410129[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.7e-12 3e-09 38.0 0.0 1 40 27 67 27 71 0.88 2 2 3.4 3.8e+03 -0.7 0.1 33 44 134 145 134 146 0.86
Sequence Information
- Coding Sequence
- ATGTTAATGATGTGTGAAGTGTACCAGGGTACGAATTGCAGCGATGGAGATAATTCGTcttcaaagaaaataaaatggaCAGAGGAAGATATGAACGGGGCAATAGAGGCAGTAATTTATGGAAACATGACACAGTGCGCCGCAGCAGAACTATTTAGCATTCCCAGACCAACACTAGCTGATCACCTGAACAAGGGAAACATTGGGAAAAGAGTGGGTCGACATTCTATAATGAACGAAGGTCATGAAAAGTTCCTCGTCAGCAAACTAATAGAGCTAGCTAACAGTGGAAAGCCAGTCACTCCACATGTAATCTGCAAGGAAGCATACTTGTTTTGCGAGCAGTTTCAGTTAAAGCATAATTTTAATAACGAAACTAGGATCGCCGGGAAGAAATGGCTTAAGAGGTTCTTGAAACGACACCCTGAGGTTATGCATTGCTTTACTTga
- Protein Sequence
- MLMMCEVYQGTNCSDGDNSSSKKIKWTEEDMNGAIEAVIYGNMTQCAAAELFSIPRPTLADHLNKGNIGKRVGRHSIMNEGHEKFLVSKLIELANSGKPVTPHVICKEAYLFCEQFQLKHNFNNETRIAGKKWLKRFLKRHPEVMHCFT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00446034;
- 90% Identity
- iTF_00446034;
- 80% Identity
- -