Ddah020491.1
Basic Information
- Insect
- Diarsia dahlii
- Gene Symbol
- -
- Assembly
- GCA_949775195.1
- Location
- OX459200.1:17292936-17320563[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 0.032 1.6e+03 0.7 0.0 24 38 188 202 183 216 0.75 2 3 4.9e-07 0.024 16.2 0.0 18 48 256 288 245 292 0.88 3 3 8.4e-07 0.041 15.4 0.0 18 48 337 369 333 373 0.87
Sequence Information
- Coding Sequence
- ATGAAAATTGAAGACGAAGGAGAGGAGAATAAAGAGCTActtatagaagaagaagatgatgaGAAAGCAGACTCACCTAAAGAAGAAGACGGGAAAGAAATGTGTGACGAAAACGAAGATTTATCAAAAGAAGAAGATGAAGGAGAAATCGATGAGGATACGGATTATTTACCTGAAGAAGAGAAAAGAGTTAAAAAGGAAAAGACACgaaaatattttactaaaaacATGAAGTTTAAAGAATATAAGCATGATAGAAAGGGCGACGAAGGAGAGGAGAATAAAGAGCTatttatagaagaagaagatgatgaGAAAGCAGACTCACCTAAAGTAGAAGATGGGAAAGAAATGTGTGAGGAAAACGAAGATTTATCAAAAGAAGAAGATGAAGGAGAAATCGATGAGGATACGGATTATTTACCTGAAGAAGAGAAAAGAGTTAAAAAGGAAAAGACACgaaaatattttactaaaaacATGATGTTTAAAGAATATAAGCATGATAGAAAGGGCGGTTCAGCAGTTTGGAAGTATTTTCTTGTAAACGAAGACAAAAATTAcgcaaaatgtaaaatatgtcTAAAAGTGCTGAAACGTAACAAAGGTTCTACGTCAGGATTAAAACACCACTTAATATCAATACACACAGAAGGAACACTTACCatagagaaaaaaaatcccGCTGAGTTAACAGAGACTGGATTTGCAGACGTGTcgaaaaataaaaggaagaatGTCTCCACAGTCTGGCAAGCATTTCTCAGAAGCAAAGACAAACAGTCTGCGAAATGTACATTATGTCACAAAGTGTTCAAAACCAATGGTACTTCGTCATTACGACGTCATTTGGAAGTTCTACACAACATACGTGAAGTAACCGAAATTATTGAGGATTTTGTTGAGGTCGAGGTCGAGTCCGAAAGTACCGAATGTGAAGagaTAGACTTTACAGACGTGTCAAAAATTAACAGAAAGAACGTCTCCACAGTCTGGCAAGCATTTCTCAGAAGCAAAGACAAACAGTTTGCTAAATGTACATTATGTGACAAAGTGTTCAAGACCAATGGTACTTCGTCATTACGACGTCATTTGGAAGTAAAACACAGCATGCGAGAAGAAACCGAAATGGTTGTAGATTTTGTTGATACTGACTCTGAAAGTACCGAAAATGAAGAAGACAAGGAGTCATCTGACGGAGAGGAAACTGATATTCAGAAGAAAGCTTCCAAGGCTAGGAAAAAAGCAAGCAAAATTCAAGCTCAGGTTGAGCAGTGCTTCGAAGACATTGAGAcTAATGAGCCGCTAATGTTTATGATGTCAAAGAAAGGCAACGTGATGCTAACTTACCGAGGCTACACGTACCATCTAAAGTACACAAGAAATTTGAAGAAAACCTGGAGATGTTCGCAACATTGCTCATTCCGTTGTCGGGCAACTCTGACCACTATAGACAATAGAGTTTGTGCAGTATACGCAACATCTAAAAGGGGCGCCCGTATCATCAAACTAGATGGATATTCTTTCTACCACCATCGAACCACAGGGCCGAAGGCGAGATGGTTCTGTGCCACCCATAATAACAAGGGATGCAAAGCTGTTATCTTTACTATTGACGATCAAATCATCAAAGTAAATAACATACATTACCACTCACCAACAGACGTGTAG
- Protein Sequence
- MKIEDEGEENKELLIEEEDDEKADSPKEEDGKEMCDENEDLSKEEDEGEIDEDTDYLPEEEKRVKKEKTRKYFTKNMKFKEYKHDRKGDEGEENKELFIEEEDDEKADSPKVEDGKEMCEENEDLSKEEDEGEIDEDTDYLPEEEKRVKKEKTRKYFTKNMMFKEYKHDRKGGSAVWKYFLVNEDKNYAKCKICLKVLKRNKGSTSGLKHHLISIHTEGTLTIEKKNPAELTETGFADVSKNKRKNVSTVWQAFLRSKDKQSAKCTLCHKVFKTNGTSSLRRHLEVLHNIREVTEIIEDFVEVEVESESTECEEIDFTDVSKINRKNVSTVWQAFLRSKDKQFAKCTLCDKVFKTNGTSSLRRHLEVKHSMREETEMVVDFVDTDSESTENEEDKESSDGEETDIQKKASKARKKASKIQAQVEQCFEDIETNEPLMFMMSKKGNVMLTYRGYTYHLKYTRNLKKTWRCSQHCSFRCRATLTTIDNRVCAVYATSKRGARIIKLDGYSFYHHRTTGPKARWFCATHNNKGCKAVIFTIDDQIIKVNNIHYHSPTDV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00446403;
- 90% Identity
- iTF_00446403;
- 80% Identity
- iTF_00446403;