Dbru022155.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Diarsia brunnea
Gene Symbol
-
Assembly
GCA_949774965.1
Location
OX459013.1:8247759-8260624[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 19 0.00012 0.011 17.1 0.1 3 23 134 154 133 154 0.97
2 19 1e-06 0.0001 23.6 1.2 1 23 160 182 160 182 0.99
3 19 6.5e-06 0.00062 21.1 2.7 1 23 188 210 188 210 0.99
4 19 3.7e-05 0.0035 18.7 2.1 1 23 225 247 225 247 0.98
5 19 9.7e-05 0.0093 17.4 0.6 1 23 262 284 262 284 0.98
6 19 6e-05 0.0057 18.0 3.1 1 23 299 321 299 321 0.98
7 19 4.1e-07 4e-05 24.8 1.5 1 23 336 358 336 358 0.99
8 19 0.00018 0.018 16.5 2.8 1 23 364 386 364 386 0.98
9 19 5.9e-05 0.0056 18.1 0.4 1 23 393 415 393 415 0.97
10 19 1.3e-05 0.0012 20.1 2.1 1 23 421 443 421 443 0.99
11 19 0.042 4 9.1 1.8 1 23 450 472 450 472 0.98
12 19 7e-07 6.7e-05 24.1 2.3 1 23 478 500 478 500 0.99
13 19 0.049 4.7 8.9 1.8 1 23 507 529 507 529 0.98
14 19 2.9e-06 0.00027 22.2 1.5 1 23 535 557 535 557 0.99
15 19 0.00054 0.052 15.0 0.7 1 23 564 586 564 586 0.99
16 19 3.2e-06 0.0003 22.1 1.9 1 23 592 614 592 614 0.98
17 19 0.0023 0.22 13.0 0.3 1 20 620 639 620 642 0.93
18 19 3.8e-05 0.0037 18.7 1.3 2 23 649 670 648 670 0.96
19 19 3.5e-06 0.00033 21.9 1.3 1 23 676 699 676 699 0.97

Sequence Information

Coding Sequence
ATGTTCGAACAGCAGATCAAGGCTGAACCCATGAGTTTCTACTCATCTCATCAACACGTACACTCCGGTCCCCCAACACTATTACGGTCAGATCCAAGCCATGCATCCATCATCAACATGAACCAACATCACCAGACACACCAAGAGGATTCTAAAGACAGCCTCATACATCATCAAGTACAACATCAGCAAGATCTCATGGAacaacatcaacaacaacaGGAAATGCAACAACAAGATGACGAGCTGAGCTTCAAAGGAATGGACGACGATGGAGTTGATATGGATATGGACGGACGACAATGTTCTCAGGGTATGGGAGTGGACATGGGATCAGTTCAAACTAAAATGGAAGTATCGAATGGGGTTCAGTCGACGCCACGATCTAAACCACAGGCTTGTAAGGTCTGTGGCAAAGTTTTGTCGTCGGCTTCCTCTTACTATGTCCACATGAAGCTTCACTCAGGAAACAAACCTTTTCAGTGCACTGTGTGCGACGCAGCTTTTTGCCGCAAGCCATACCTAGAAGTGCACATGCGCACACACACAGGGGAACGCCCCTTCCAGTGCGACCTCTGCCTCAAGCGCTTCACGCAGAAATCCAGTCTCAACACGCACAAACGCGTTCATACAGATGAGCACATGCGCGCGTTGATGGTGAAGGACCGGCCCTACAGGTGTGATCTCTGTCTGATGCGGTTCACGCAGAGCTCCAGCCTCAACCGACACAAGAAAATTCACACGGAGGAACACAGACGCGCGCTGCTGGCTAAGGATCGGCCCTACCAATGCGGCATCTGCTATGTGAGATTCACCCAGAAATCAAGTTTGGGCCGGCACGGAAAAATACATACCGAGGAGCACAGACGAGCCCTGTTAGAGAAAGTGCGGCCGTACCAGTGCCACATCTGTTTTATGCGCTTCACTCAGAAGTCCAGCCTGGGACGACATGGGAAAATACACACTGAGGAGCACATGCAATCGCTGATCAACAAAGTGCGCCCCTATCAATGCGACATCTGTGACAAGCGGTTCACGCAGAAGTCCAGCCTTGGTACTCATAAACGTATACACACCGGGGAGCGGCCGTTCCAGTGCACCGTCTGCCTCAAGTCCTTCACGCAGAAGTGCGCGCTCAATTTGCACGAAAAAATACATACGGTGCAAGGGCGACCTTTCGCGTGCGGGCAATGCCCGGCGGCGTTCGCCCGCCGCTGCAACCTGGACATTCACATGCGCACGCATACAGGCGAGCGGCCCTATCAGTGCGACGCGTGTCTGAAGCGCTTCACGCAGAAGTCCAGCCTCAATATACATAAGAGGACGCACACAGTCCAGGGCAGACCGTTCCAGTGCCTGTCGTGCCCCGCCGCCTTCACCTGCAAGCAATACCTGGAGATACACACGCGCACGCACACCGGTGAGCGGCCATATCAGTGCGACATCTGCCTGAAGCGCTTCACTCAGAAGTCCAGTCTCAACATCCACAAGCGGACGCACTCAGTGCAGGGGCGGCCCTTCCAGTGCCTGCAGTGCCCGGCCGCCTTCACCTGCAAGCAGTACCTGGAGATCCACAACCGCACGCACACCGGCGAGCGGCCCTACCAGTGTGACGTATGCCTCAAGAGATTCGCGCAAAAATCAACACTCAATATACACAAACGAACGCACACAGTGCAAGGGCGGCCGTACCAATGCATGGAGTGCCCGGCGGCGTTCACTTGCAAGCCGTACCTGGAGATACACATGCGTACGCACACGGGGGAAAGGCCGTTCGAGTGCGATGTCTGTTACAAACGCTTCACGCAGAAATCAACGCTCAACATTCACAAGCGAATTCATACCGGGGAACGTCCTTATGCTTGTGATATTTGTCAGAAACGTTTTGCTGTGAAGAGCTATGTAACCGCGCACAGATGGTCTCACGTGGCCGACAAGCCGTTGAACTGCGACCGCTGCTCCATGTCGTTCACATCAAAGTCGCAGTTCGCGCtgcacatccgcacgcacaccACCGGCTCCTGCTACGAGTGCAGCGTCTGCGGCCGTTCCTTCGTAAGGGACAGCTATTTAATAAgACACCACAACCGTGTCCACCGCGAGAACCACAGCAACGTGTCGGCCAACAGCATCGGCACCATCAATAGTGTTGCAACCAACACCAACAATAGCAACTTTGACTCGCCCGGCGTTTGTGACTTAAGCTTCGTTCCAATGGTGAATCGTTACATGACATCTCAGGGGACCCAAGTGTCCATGCAGGATACCAACAAAATGTCTGCGATGTCGCCACAGTCTATTGCGTCTATTTCGTCGCCCCCTCCTTCGCATACCCCCTCGCATACGCCCCAGCCCCAGATGTCTGGTCAGATGCAtcttgcagactga
Protein Sequence
MFEQQIKAEPMSFYSSHQHVHSGPPTLLRSDPSHASIINMNQHHQTHQEDSKDSLIHHQVQHQQDLMEQHQQQQEMQQQDDELSFKGMDDDGVDMDMDGRQCSQGMGVDMGSVQTKMEVSNGVQSTPRSKPQACKVCGKVLSSASSYYVHMKLHSGNKPFQCTVCDAAFCRKPYLEVHMRTHTGERPFQCDLCLKRFTQKSSLNTHKRVHTDEHMRALMVKDRPYRCDLCLMRFTQSSSLNRHKKIHTEEHRRALLAKDRPYQCGICYVRFTQKSSLGRHGKIHTEEHRRALLEKVRPYQCHICFMRFTQKSSLGRHGKIHTEEHMQSLINKVRPYQCDICDKRFTQKSSLGTHKRIHTGERPFQCTVCLKSFTQKCALNLHEKIHTVQGRPFACGQCPAAFARRCNLDIHMRTHTGERPYQCDACLKRFTQKSSLNIHKRTHTVQGRPFQCLSCPAAFTCKQYLEIHTRTHTGERPYQCDICLKRFTQKSSLNIHKRTHSVQGRPFQCLQCPAAFTCKQYLEIHNRTHTGERPYQCDVCLKRFAQKSTLNIHKRTHTVQGRPYQCMECPAAFTCKPYLEIHMRTHTGERPFECDVCYKRFTQKSTLNIHKRIHTGERPYACDICQKRFAVKSYVTAHRWSHVADKPLNCDRCSMSFTSKSQFALHIRTHTTGSCYECSVCGRSFVRDSYLIRHHNRVHRENHSNVSANSIGTINSVATNTNNSNFDSPGVCDLSFVPMVNRYMTSQGTQVSMQDTNKMSAMSPQSIASISSPPPSHTPSHTPQPQMSGQMHLAD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00010401;
90% Identity
iTF_00007324;
80% Identity
-