Dabb028365.1
Basic Information
- Insect
- Diaprepes abbreviatus
- Gene Symbol
- -
- Assembly
- GCA_034092305.1
- Location
- JASJET010000107.1:1984444-1985166[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 5 0.0008 16 7.4 0.1 15 44 28 57 16 62 0.83 2 5 0.00017 3.4 9.5 0.0 20 44 61 85 58 88 0.90 3 5 0.0017 34 6.3 0.0 22 52 91 121 87 122 0.87 4 5 0.0002 4 9.3 0.3 21 51 118 147 116 151 0.85 5 5 0.026 5.1e+02 2.6 0.1 21 31 174 184 161 201 0.76
Sequence Information
- Coding Sequence
- ATGATACATACAGGTGAAAAAAGATATGAATGTAATGAATGCCACACGCGATATGCCCAtaaatcaattttagaaaaacacGTAAGAAGTCGACATACTGGCGAAAGACCGTTCCATTGTGATTTGTGTCCTAAGTCGTTTGCCGCTAAATCAAACTTAAATAGTCATATTAAAACTCATCAGGGTATTCGACCTTATACTTGTGGCATTTGCGGACATCAGTTTTCTCAGAAGTCTAATTTGAAGAAACACATTGTAGGCCATTCTGGAGAAAAGACCATTGAATGTAACGTATGTCATAAAATGTTTTCTACTAAATACAACTTACAATCTCATATGGAAGTGCATAATGGTGAAAAGCCATATTTTTGTGATATATGTTATGAAAGTTTCCGCCATGCGACACCTCTACAAGTGCATCGAATGATACATTTTGGTAAACGACCTTATACATGTAATACATGTGGAATGAACTTTTTACACCAATCAGGTTTAACCGTTCATGAAAAAACACACTCTGGGGATAAACCTTTCGCTTGCCCCGTGTGTGGTAAAAGATTTGTTAAGGAATCAATAGTTGCTAGTCATTTAACTCTCCATACAGGTGACAAACAATTTGAGTGTTTTATGTGTGGGAGAAGATATGCTGATAAGTCGAAATTAAATTATCATCTTAAGAAAAAATGTCTTAAAGGTATAAGTATGTCGATAAAAGTtcgttaa
- Protein Sequence
- MIHTGEKRYECNECHTRYAHKSILEKHVRSRHTGERPFHCDLCPKSFAAKSNLNSHIKTHQGIRPYTCGICGHQFSQKSNLKKHIVGHSGEKTIECNVCHKMFSTKYNLQSHMEVHNGEKPYFCDICYESFRHATPLQVHRMIHFGKRPYTCNTCGMNFLHQSGLTVHEKTHSGDKPFACPVCGKRFVKESIVASHLTLHTGDKQFECFMCGRRYADKSKLNYHLKKKCLKGISMSIKVR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00444438;
- 90% Identity
- iTF_00444438;
- 80% Identity
- iTF_00444438;