Dabb028364.1
Basic Information
- Insect
- Diaprepes abbreviatus
- Gene Symbol
- -
- Assembly
- GCA_034092305.1
- Location
- JASJET010000107.1:1970889-1971641[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 0.0049 98 4.9 0.0 20 30 19 29 12 36 0.88 2 4 3.2e-06 0.064 15.1 0.1 21 52 48 79 42 80 0.90 3 4 0.00052 10 8.0 0.0 21 52 76 107 74 108 0.94 4 4 0.058 1.1e+03 1.4 0.0 22 44 133 155 119 165 0.87
Sequence Information
- Coding Sequence
- ATGACTTTTCCATATAAATCGGCTTACGAAGTTCATAGAAATACGCATTTAGATAAATCCGAACAGCCTTACCCGTGTGACATTTGCGGTTCTAGATTCGCTATAAAATCGATTATGGTAACACATCGAATTATACATTTTGGTGAAAGACCACATGCTTGCCCTCTATGCGATATGAGATTTACTCAAAAATCAAATCTTAAGAAACACGTTCAGTTACATTCAGGCGAAAAACCATTTATGTGCGACAtttgtaaaaagaaattttttacgaaGCATACTTTACAATCTCATTTGGAAACTCATTATGGAGCCAAACCATATAAATGTAGTGAATGCGAAGAAAGTTTTAGACATAAGGCCAGATTAGAAGTACACAAGTTAGTACATAAGGGTAAGGAACCTTTTAAGTGCGATACTTGCGAAGCACTATTTGCTCACAGTTGGACGCTAAAGGCGCATAAGCAAACGCACGAGGGCCAGAGGCCTTTTGAATGTAGCGTATGTAGTAAACGGTTTGTTAAACAGTGGATTCTTACTAGTCATATGCGAATTCACACTGGCGATTATCCGTTTGAATGTGAAATATGTGGACGACGATATGTCGataaagcaaaattaaattttcatcagAAACAAAGATGCTTAAATCCAGATGTTCCCACCTCTAAGCTTTTTAGAAATAGAACTAAAATAACGGTAGGAAATGTACAAGAGTTTGTAGAAAACGTGTCTACCTCAGTAGCAGTATGA
- Protein Sequence
- MTFPYKSAYEVHRNTHLDKSEQPYPCDICGSRFAIKSIMVTHRIIHFGERPHACPLCDMRFTQKSNLKKHVQLHSGEKPFMCDICKKKFFTKHTLQSHLETHYGAKPYKCSECEESFRHKARLEVHKLVHKGKEPFKCDTCEALFAHSWTLKAHKQTHEGQRPFECSVCSKRFVKQWILTSHMRIHTGDYPFECEICGRRYVDKAKLNFHQKQRCLNPDVPTSKLFRNRTKITVGNVQEFVENVSTSVAV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00444480;
- 90% Identity
- iTF_00444480;
- 80% Identity
- iTF_00444480;